MétaCan
Menu
Back to cohort
Record W3027966536 · doi:10.1101/2020.04.27.20081901

Enhanced Contact Investigations for Nine Early Travel-Related Cases of SARS-CoV-2 in the United States

2020· preprint· en· W3027966536 on OpenAlexaff
Rachel M. Burke, Sharon Balter, Emily Barnes, Vaughn Barry, Karri Bartlett, Karlyn D. Beer, Isaac Benowitz, Holly M. Biggs, Hollianne Bruce, Jonathan Bryant-Genevier, Jordan Cates, Kevin Chatham‐Stephens, Nora Chea, Howard Chiou, Demian Christiansen, Victoria Chu, Shauna Clark, Sara H. Cody, Max Cohen, Erin E. Conners, Vishal Dasari, Patrick Dawson, Traci DeSalvo, Matthew Donahue, Alissa Dratch, Lindsey M. Duca, Jeffrey S. Duchin, Jonathan Dyal, Leora R. Feldstein, Marty Fenstersheib, Marc Fischer, Rebecca Fisher, Chelsea Foo, Brandi Freeman-Ponder, Alicia M. Fry, Jessica Gant, Romesh Gautom, Isaac Ghinai, Prabhu Gounder, Cheri Grigg, Jeffrey D. Gunzenhauser, Aron J. Hall, George S. Han, Thomas Haupt, Michelle Holshue, Jennifer C. Hunter, Mireille Ibrahim, Max W. Jacobs, M. Claire Jarashow, Kiran Joshi, Talar Kamali, Vance Kawakami, Moon Kim, Hannah L. Kirking, Amanda Kita-Yarbro, Rachel Klos, Miwako Kobayashi, Anna Kocharian, Misty Lang, Jennifer E. Layden, Eva Leidman, Scott Lindquist, Stephen Lindstrom, Ruth Link‐Gelles, Mariel Marlow, Claire P. Mattison, Nancy McClung, Tristan D. McPherson, Lynn Mello, Claire M. Midgley, Shannon Novosad, Megan T. Patel, Kristen Pettrone, Satish K. Pillai, Ian W. Pray, Heather E. Reese, Heather Rhodes, Susan Robinson, Melissa A. Rolfes, Janell Routh, Rachel Rubin, Sarah L. Rudman, Denny Russell, Sarah Scott, Varun Shetty, Sarah E. Smith-Jeffcoat, Elizabeth Soda, Chris Spitters, Bryan Stierman, Rebecca Sunenshine, Dawn Terashita, Elizabeth Traub, Grace E. Vahey, Jennifer R. Verani, Megan Wallace, Matthew Westercamp, Jonathan M. Wortham, Amy Xie, Anna R. Yousaf, Matthew Zahn

Bibliographic record

VenuemedRxiv · 2020
Typepreprint
Languageen
FieldMathematics
TopicCOVID-19 epidemiological studies
Canadian institutionsResponse Biomedical (Canada)
FundersCenters for Disease Control and Prevention
KeywordsContact tracingCoronavirus disease 2019 (COVID-19)MedicineSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)PandemicIsolation (microbiology)Transmission (telecommunications)Disease controlEnvironmental healthCoronavirusDiseaseEmergency medicineInternal medicineInfectious disease (medical specialty)Biology

Abstract

fetched live from OpenAlex

ABSTRACT Background Coronavirus disease 2019 (COVID-19), the respiratory disease caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was first identified in Wuhan, China and has since become pandemic. As part of initial response activities in the United States, enhanced contact investigations were conducted to enable early identification and isolation of additional cases and to learn more about risk factors for transmission. Methods Close contacts of nine early travel-related cases in the United States were identified. Close contacts meeting criteria for active monitoring were followed, and selected individuals were targeted for collection of additional exposure details and respiratory samples. Respiratory samples were tested for SARS-CoV-2 by real-time reverse transcription polymerase chain reaction (RT-PCR) at the Centers for Disease Control and Prevention. Results There were 404 close contacts who underwent active monitoring in the response jurisdictions; 338 had at least basic exposure data, of whom 159 had ≥1 set of respiratory samples collected and tested. Across all known close contacts under monitoring, two additional cases were identified; both secondary cases were in spouses of travel-associated case patients. The secondary attack rate among household members, all of whom had ≥1 respiratory sample tested, was 13% (95% CI: 4 – 38%). Conclusions The enhanced contact tracing investigations undertaken around nine early travel-related cases of COVID-19 in the United States identified two cases of secondary transmission, both spouses. Rapid detection and isolation of the travel-associated case patients, enabled by public awareness of COVID-19 among travelers from China, may have mitigated transmission risk among close contacts of these cases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.027
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.498
Threshold uncertainty score0.981

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.027
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.376
GPT teacher head0.434
Teacher spread0.059 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2020
Admission routes1
Has abstractyes

Explore more

Same venuemedRxivSame topicCOVID-19 epidemiological studiesFrench-language works237,207