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Record W3036073072 · doi:10.48336/wqzc-0m07

Characterization of CG34126: the Drosophila melanogaster homologue of a novel Parkinson Disease gene

2020· dissertation· en· W3036073072 on OpenAlexafffund
Tarana Saddika

Bibliographic record

VenueMemorial University Research Repository (Memorial University) · 2020
Typedissertation
Languageen
FieldMedicine
TopicParkinson's Disease Mechanisms and Treatments
Canadian institutionsMemorial University of Newfoundland
FundersNatural Sciences and Engineering Research Council of CanadaMemorial University of Newfoundland
KeywordsDrosophila melanogasterGene knockdownBiologyPINK1ParkinRNA interferenceGeneticsParkinson's diseaseDopaminergicGeneNeurodegenerationEctopic expressionPhenotypeTransgeneAromatic L-amino acid decarboxylaseModel organismGene silencingCell biologyDopamineNeuroscienceDiseaseRNAMedicinePathology

Abstract

fetched live from OpenAlex

Parkinson Disease (PD) is a progressive and debilitating neurodegenerative disease characterized by the inadequate function or the loss of dopamine-producing neurons in the human midbrain. PD has a complex etiology including aberrant protein inclusion, mitochondrial dysfunction, oxidative stress, and defects in protein trafficking, which may occur due to genetic or non-genetic factors. Recently identified PD causative genes can be evaluated in model organisms, through which pathophysiological interactions with previously discovered PD genes may be determined. A new gene associated with PD, UHRF1BP1L, has a putative role in mitochondrial dynamics and protein homeostasis, similar to several other well-established PD genes. I investigated CG34126, the only homologue of UHRF1BP1L in Drosophila melanogaster, in an attempt to model PD using the UAS-GAL4 system of inducible gene expression in the dopaminergic neurons as well as during the development of the eye. In brief, RNAi-mediated knockdown of CG34126 can reduce lifespan and locomotor ability over time, and the overexpression of CG34126 directed by the Dopa decarboxylase (Ddc)-Gal4 transgene leads to reduced longevity and climbing ability throughout life. However, overexpression of CG34126 partially rescues the parkin-RNA-interference model of PD by increasing both longevity and locomotor ability over time. No neurodevelopmental defect was observed through a detailed biometric analysis of eye phenotypes, either from overexpression or knockdown of CG34126. As the altered ectopic expression of CG34126 can either positively or negatively influence ageing and locomotion, the consequences of altering UHRF1BP1L function in the fly contributes a better understanding of PD and general ageing mechanisms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.422
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.262
Teacher spread0.231 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2020
Admission routes2
Has abstractyes

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