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Record W3036626855 · doi:10.1101/2020.06.17.157958

Dynamic expression and localization of the LIN-2/7/10 protein scaffolding complex during <i>C. elegans</i> vulval development

2020· preprint· en· W3036626855 on OpenAlexafffund
Kimberley D. Gauthier, Christian E. Rocheleau

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics, Aging, and Longevity in Model Organisms
Canadian institutionsMcGill UniversityMcGill University Health Centre
FundersNatural Sciences and Engineering Research Council of CanadaNational Institutes of HealthMcGill University Health CentreUniversité Laval
KeywordsCell biologyEndosomeColocalizationBiologyScaffold proteinGolgi apparatusCaenorhabditis elegansEndomembrane systemEpithelial polarityMembrane proteinSignal transductionBiochemistryCellMembraneEndoplasmic reticulum

Abstract

fetched live from OpenAlex

Abstract The evolutionarily conserved LIN-2 (CASK)/LIN-7 (Lin7A-C)/LIN-10 (APBA1) complex plays an important role in regulating spatial organization of membrane proteins and signaling components. In C. elegans, the complex is essential for development of the vulva by promoting the localization of the sole Epidermal Growth Factor Receptor (EGFR) orthologue, LET-23, to the basolateral membrane of the vulva precursor cells (VPCs) where it can specify the vulval cell fate. However, the expression and localization of the LIN-2/7/10 complex, and how the complex regulates receptor localization, are not known. Here we describe an in vivo analysis of the complex in C. elegans VPCs. Only LIN-7 colocalizes with LET-23 EGFR at the basolateral membrane, while the LIN-2/7/10 complex components instead colocalize at cytoplasmic foci, consistent with Golgi or endosomes. LIN-10 recruits LIN-2, which in turn recruits LIN-7. We demonstrate that the complex forms in vivo with particularly strong interaction and colocalization between LIN-2 and LIN-7. Our data suggest that the LIN-2/7/10 complex forms on endomembrane compartments where it likely targets LET-23 EGFR to the basolateral membrane, and point to distinct regulation between LIN-2/7 and LIN-10. Summary Statement LIN-10 recruits LIN-2 and LIN-7 to Golgi or recycling endosomes, consistent with targeting rather than tethering the epidermal growth factor receptor to the basolateral membrane in C. elegans .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.204
Teacher spread0.194 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2020
Admission routes2
Has abstractyes

Explore more

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