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Record W3038756972 · doi:10.23880/ggtij-16000108

Ectopic Gene Expression to Restore the Ascorbate Biosynthesis Pathway in Vertebrates Lacking Functional Gulo

2018· article· en· W3038756972 on OpenAlexafffund
Herb E. Schellhorn

Bibliographic record

VenueGenomics & Gene Therapy International Journal · 2018
Typearticle
Languageen
FieldEnvironmental Science
TopicEnvironmental Toxicology and Ecotoxicology
Canadian institutionsMcMaster University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsEctopic expressionGeneBiosynthesisGene expressionBiologyCell biologyGenetics

Abstract

fetched live from OpenAlex

Background: Vitamin C (VC) deficiency is due to loss of the gene coding for ι-gulono-γ-lactone oxidase (Gulo).VC deficiency is an excellent candidate for therapeutic intervention by ectopic gene expression because a single gene mutation is responsible for the condition and, it is known, a priori, that supplementation effectively rescues the deficiency (at least with respect to the development of scurvy).There are several strategies to ectopically express exogenous genes or silence endogenous genes including viruses and nucleic acids, to ensure that the protein products encoded by exogenous genes are present in the cell, or those encoded by endogenous genes to be silenced are absent.Objective: We review strategies to restore ascorbate biosynthesis in vertebrates.We will discuss the physiology of vitamin C and evaluate the potential of the different methods for the restoration of Gulo expression, and subsequently the endogenous production of VC.Methods: Studies that have targeted manipulation of vitamin C synthesis in vertebrates, particularly the mouse model, over the last 20 years were examined.Results: Vectors of ectopic gene expression were identified as nucleic acids such as linear and plasmid DNA, mRNA, as well as viruses such as adenoviruses and lentiviruses.Direct enzyme replacement was identified as another method of Gulo expression.Conclusion: Ectopic gene expression can be used to rescue metabolic deficiency in VC synthesis using several different modes of delivery.New technologies that directly modify genomes (e.g.CRISPR) that have not yet been applied to this physiological deficiency may allow new investigations into VC physiology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.243
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes2
Has abstractyes

Explore more

Same venueGenomics & Gene Therapy International Journal→Same topicEnvironmental Toxicology and Ecotoxicology→French-language works237,207→