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Record W3039523463 · doi:10.1016/j.jmoldx.2020.06.008

Improved Diagnosis of Rare Disease Patients through Systematic Detection of Runs of Homozygosity

2020· article· en· W3039523463 on OpenAlexafffund
Leslie Matalonga, Steven Laurie, Anastasios Papakonstantinou, Davide Piscia, Elisabetta Mereu, Gemma Bullich, Rachel Thompson, Rita Horváth, Luis A. Pérez‐Jurado, Olaf Rieß, Marta Gut, Gert‐Jan B. van Ommen, Hanns Lochmüller, Sergi Beltrán, Alessandra Renieri, Ali Dursun, Antoni Matilla‐Dueñas, Bru Cormand, Carlo Rivolta, Carmen Ayuso, Carmen Espinós, Christian Scerri, Dilek Yalnızoğlu, Doriette Soler, Éva Morava, Fabrizio Barbetti, Francesca Forzano, Francesca Mari, Francesco Muntoni, Frederic Tort, Henry Houlden, María‐Isabel Tejada, Jan Senderek, Javier Benı́tez, Javier Corral De La Calle, Jordi Serra, José M. Millán, José Carlos Segovia, Juan Ramón Gimeno Blanes, Judith Armstrong, Laura Vilarinho, Lluı́s Montoliu, Maria Antonietta Mencarelli, Marina Mora, Paola Bianchi, Pavel Seeman, Perry Elliott, Alessandra Ferlini, Alexis Brice, Sarah J. Tabrizi, Thomas Klockgether, Vincent Timmerman, Volker Straub, Semra Hız Kurul, Yavuz Oktay, Serdal Güngör, Ahmet Yaramış, Uluç Yiş, Alfons Macaya, Antònia Ribes, Aurora Pujol, Conxi Lázaro, Daniel Grinberg, Eduardo F. Tizzano, Francesc Cardellach, Francesc Palau, Montserrat Milà, P. Gallano, Rafael Artuch, Ramon MartiSeves, Gonzalo Villanueva, Silvia M. Vidal, Glòria Garrabou, Susana Balcells, Roser Urreizti, Ivon Cuscó, Irene Valenzuela

Bibliographic record

VenueJournal of Molecular Diagnostics · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Rare Diseases
Canadian institutionsOttawa HospitalChildren's Hospital of Eastern OntarioUniversity of Ottawa
FundersH2020 European Research CouncilDepartament de Salut, Generalitat de CatalunyaInstituto de Salud Carlos IIIEuropean Research CouncilMedical Research CouncilSeventh Framework ProgrammeHorizon 2020 Framework ProgrammeMinisterio de Asuntos Económicos y Transformación Digital, Gobierno de EspañaNational Institute for Health and Care ResearchGeneralitat de CatalunyaEuropean Regional Development FundEuropean CommissionCanadian Institutes of Health ResearchWellcomeEuropean Molecular Biology LaboratoryNewton FundWellcome Trust
KeywordsConsanguinityRuns of HomozygosityExome sequencingDisease gene identificationExomeInbreedingBiologyGeneticsDiseaseMedicinePopulationMutationInternal medicineGeneGenotype

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.103
Threshold uncertainty score0.540

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.209
Teacher spread0.203 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations34
Published2020
Admission routes2
Has abstractno

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