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Record W3041675387

The pro-cell death Bcl-2 family member, BNIP3 is mutated in breast tumors and this mutation increases resistance to hypoxia-induced cell death in breast cancer cell lines

2006· article· en· W3041675387 on OpenAlexaffabout
Nicolle A. Bristow, Elizabeth S. Henson, Niki Vegh-Yarema, David D. Eisenstat, Spencer B. Gibson

Bibliographic record

VenueCancer Research · 2006
Typearticle
Languageen
FieldImmunology and Microbiology
Topicinterferon and immune responses
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsBiologyCancer researchProgrammed cell deathBreast cancerMissense mutationMutationNonsense mutationGeneMolecular biologyCancerApoptosisGenetics
DOInot available

Abstract

fetched live from OpenAlex

4078 BNIP3 (Bcl-2/adenovirus E1B 19 kDa Interacting Protein) is a pro-cell death member of the Bcl-2 family of proteins. It has been shown that BNIP3 expression is increased in hypoxic regions of breast tumors. This increased expression is paradoxical since BNIP3 induces cell death, yet these tumor cells remain viable. One possible explanation is the presence of mutations in the BNIP3 gene leading to the inactivation of the BNIP3 protein. We have previously found that BNIP3 is over-expressed in brain glioblastoma multiforme (GBM) tumors and is mutated in 17% of these tumors inactivating its cell death function. Therefore, we are investigating whether mutations in the BNIP3 gene are present in breast tumors and whether these mutations block hypoxia-induced cell death. To determine whether BNIP3 is mutated in breast tumors, RNA is isolated from frozen high grade breast tumor sections from the Manitoba Breast Tumor Bank. Reverse-transcriptase PCR is performed and the resultant cDNA sequenced. Of the 17 tumors sequenced to date, four mutations have been found, including two nonsense mutations (single nucleotide insertions) and two missense mutations. These mutations were confirmed using a single nucleotide primer extension assay. Immuno-fluorescent staining for BNIP3 expression in breast tumors revealed BNIP3 expression in tumors where the BNIP3 gene is mutated. We also determined that the ovarian cancer cell line SkOv3 has a mutation in BNIP3 resulting in a truncated protein. To determine if the mutations detected in breast tumors affect BNIP3 protein function, the breast cancer cell line MCF-7 and the human embryonic cell line HEK293 were transfected with expression constructs containing wild type or mutant BNIP3 cDNA. The expression of mutant BNIP3 renders these cells more resistant to hypoxia-induced cell death compared to cells expressing empty vector or wild type BNIP3. Since BNIP3 induces cell death by localizing with the mitochondria, we evaluated the ability of mutant BNIP3 to localize to the mitochondria. We demonstrated that mutant BNIP3 localizes to the mitochondria. Ongoing studies will demonstrate whether breast cancer cells expressing mutant BNIP3 injected into nude mice form tumors faster than cells expressing empty vector. Overall, our results indicate that BNIP3 is mutated in breast tumors and these mutations render breast cancer cells resistant to hypoxia-induced cell death.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.327
Teacher spread0.292 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2006
Admission routes2
Has abstractyes

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