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Record W3043233900 · doi:10.1101/2020.07.10.20142679

The Canadian ALS Neuroimaging Consortium (CALSNIC) - a multicentre platform for standardized imaging and clinical studies in ALS

2020· preprint· en· W3043233900 on OpenAlexaffabout
Sanjay Kalra, Muhammad Haris Khan, Laura Barlow, Christian Beaulieu, Michael Benatar, Hannah Briemberg, Sneha Chenji, Míriam Garrido Clua, Sumit Das, Annie Dionne, Nicolas Dupré, Derek Emery, Dean T. Eurich, Richard Frayne, Angela Genge, Summer Gibson, Simon J. Graham, Christopher C. Hanstock, Abdullah Ishaque, Jeffrey T. Joseph, Julia Keith, Lawrence Korngut, Dennell Krebs, Cheryl R. McCreary, Pradip Pattany, Peter Seres, Christen Shoesmith, Trevor Szekeres, Fred Tam, Robert C. Welsh, Alan H. Wilman, Yee‐Hong Yang, Yana Yunusova, Lorne Zinman

Bibliographic record

VenuemedRxiv · 2020
Typepreprint
Languageen
FieldMedicine
TopicAmyotrophic Lateral Sclerosis Research
Canadian institutionsWestern UniversityUniversity of TorontoUniversity of AlbertaUniversité LavalUniversity of CalgaryMcGill UniversityUniversity of British Columbia
Fundersnot available
KeywordsNeuroimagingAmyotrophic lateral sclerosisMedicineNeuropsychologyMagnetic resonance imagingPopulationDiseaseMedical physicsPathologyPsychiatryCognitionRadiology

Abstract

fetched live from OpenAlex

Abstract Background Amyotrophic lateral sclerosis (ALS) is a disabling and rapidly progressive neurodegenerative disorder. Increasing age is an important risk factor for developing ALS, thus the societal impact of this devastating disease will become more profound as the population ages. A significant hurdle to finding effective treatment has been an inability to accurately quantify cerebral degeneration associated with ALS in humans. Advanced magnetic resonance imaging (MRI) techniques hold promise in providing a set of biomarkers to assist in aiding diagnosis and in efficiently evaluating new drugs to treat ALS. Methods The Canadian ALS Neuroimaging Consortium (CALSNIC) was founded to develop and evaluate advanced MRI-based biomarkers that delineate biological heterogeneity, track disease progression, and predict survival in a large and heterogeneous sample of ALS patients. Findings CALSNIC has launched two studies to date (CALSINC-1, CALSNIC-2), acquiring multimodal neuroimaging, neurological, neuropsychological data, and neuropathological data from ALS patients and healthy controls in a prospective and longitudinal fashion from multiple centres in Canada and, more recently, the United States. Clinical and MRI protocols are harmonized across research centres and different MR vendors. Interpretation CALSNIC provides a multicentre platform for studying ALS biology and developing MRI-based biomarkers. Funding Canadian Institutes of Health Research, ALS Society of Canada, Brain Canada Foundation, Shelly Mrkonjic Research Fund

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.073
metaresearch head score (Gemma)0.055
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Protocol · Consensus signal: none
Teacher disagreement score0.968
Threshold uncertainty score0.527

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0730.055
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0070.009
Science and technology studies0.0050.003
Scholarly communication0.0050.002
Open science0.0050.009
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0130.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.200
GPT teacher head0.449
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreProtocol

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations38
Published2020
Admission routes2
Has abstractyes

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