MétaCan
Menu
Back to cohort
Record W3044332143 · doi:10.3201/eid2609.190524

Costs Associated with Nontuberculous Mycobacteria Infection, Ontario, Canada, 2001–2012

2020· article· en· W3044332143 on OpenAlexaffabout
Lauren Ramsay, Emily Shing, John Wang, Theodore K. Marras, Jeffrey C. Kwong, Sarah K. Brode, Frances Jamieson, Beate Sander

Bibliographic record

VenueEmerging infectious diseases · 2020
Typearticle
Languageen
FieldMedicine
TopicMycobacterium research and diagnosis
Canadian institutionsWest Park Healthcare CentrePublic Health OntarioUniversity of TorontoUniversity Health Network
Fundersnot available
KeywordsNontuberculous mycobacteriaMycobacterium avium complexMycobacterium InfectionsMicrobiologyMedicineCoinfectionTuberculosisMycobacteriumVirologyBiologyHuman immunodeficiency virus (HIV)Pathology

Abstract

fetched live from OpenAlex

P ulmonary disease (PD) caused by nontuberculous mycobacteria (NTM) is an emerging public health threat (1).As identification of persons with NTM-PD increases (2,3), information about the economic burden of NTM-PD can help decision makers set funding priorities.NTM-PD accounts for most NTM infections and poses particular challenges (4).One challenge is that NTM-PD often occurs in patients with preexisting conditions such as cystic fibrosis, lung cancer, and chronic obstructive pulmonary disease (5,6); these conditions affect the spectrum and severity of signs and symptoms (7).Treatment of NTM-PD is complex, typically involving use of >3 antimicrobial agents for >18 months (5).Eradication of the organism is challenging; a recent meta-analysis demonstrated a success rate of 60% for eradication of Mycobacterium avium complex PD (MAC-PD) (8).Furthermore, recurrence after completed treatment for MAC-PD is extremely common; recurrence rates are 30% at 14 months (9) and ≈50% at 4 years (10).During 1998-2010, the prevalence of NTM-PD in Ontario, Canada, increased; the 5-year prevalence increased from 29.3 (1998-2002) to 41.3 (2003-2007) cases/100,000 persons (2).The costs of NTM-PD in Canada are not well established; to the best of our knowledge, no studies have used population-based data to estimate associated costs.One study conducted in a tertiary care center in Toronto, Ontario, estimated the median monthly cost per NTM-PD patient to be approximately CAD $500; most of the costs were associated with medications (11).Although informative, that study considered only 1 clinic and did not account for potential long-term costs.Our objective with this study was to determine the costs associated with NTM-PD and with pulmonary isolation of NTM from patients without disease (NTM-PI), from the healthcare payer perspective, in Ontario, Canada, during 2001-2012.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.074
Threshold uncertainty score0.537

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.004
Science and technology studies0.0020.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.238
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations12
Published2020
Admission routes2
Has abstractyes

Explore more

Same venueEmerging infectious diseasesSame topicMycobacterium research and diagnosisFrench-language works237,207