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Record W3044541666 · doi:10.3389/fcell.2020.00675

Sticking With It: ER-PM Membrane Contact Sites as a Coordinating Nexus for Regulating Lipids and Proteins at the Cell Cortex

2020· review· en· W3044541666 on OpenAlexafffund
Mohammed Fayyad Zaman, Aleksa Nenadic, Ana Radojičić, Abel Rosado, Christopher Beh

Bibliographic record

VenueFrontiers in Cell and Developmental Biology · 2020
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCellular transport and secretion
Canadian institutionsUniversity of British ColumbiaSimon Fraser University
FundersNatural Sciences and Engineering Research Council of CanadaWeill Cornell Medical College
KeywordsMembrane contact siteEndoplasmic reticulumCell biologyMembraneCell cortexTetheringMembrane proteinCell membraneIntegral membrane proteinBiologyChemistryCellBiochemistryCytoskeleton

Abstract

fetched live from OpenAlex

Membrane contact sites between the cortical endoplasmic reticulum (ER) and the plasma membrane (PM) provide a direct conduit for small molecule transfer and signaling between the two largest membranes of the cell. Contact is established through ER integral membrane proteins that physically tether the two membranes together. Primary tethers including VAMP-associated proteins (VAPs), Anoctamin/TMEM16/Ist2p homologues, and extended synaptotagmins (E-syts), are largely conserved and are both necessary and sufficient for establishing ER-PM association. In addition, other species-specific ER-PM tether proteins impart unique functional attributes to both membranes at the cell cortex. In yeast, the deletion of seven primary tethers results in phospholipid dysregulation, including defects in phosphoinositide regulation and lipid distribution. In plants, environmental stresses promote dynamic changes ER-PM MCSs and in phosphoinositide distribution. The general mechanism of membrane association is, however, remarkably nonspecific given the diversity of tethering mechanisms, and that chimeric artificial membrane staples can functionally replace endogenous tethers. Nonetheless, ER-PM contact coordinates ER lipid biosynthetic output with the membrane requirements of the PM, including the regulation of phosphoinositide signaling and responses to membrane stresses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.988
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.241
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations51
Published2020
Admission routes2
Has abstractyes

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