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Record W3046157041 · doi:10.22038/ijmp.2018.12920

Optimized co-registration method of Spinal cord MR Neuroimaging data analysis and application for generating multi-parameter maps

2018· article· en· W3046157041 on OpenAlexaff
Hamed Dehghani, Mohammad Ali Oghabian, Seyed Amir Hossein Batouli, Ali Khatibi

Bibliographic record

VenueIranian journal of medical physics · 2018
Typearticle
Languageen
FieldEngineering
TopicMedical Imaging and Analysis
Canadian institutionsMcGill UniversityMontreal Neurological Institute and Hospital
Fundersnot available
KeywordsMutual informationImage registrationArtificial intelligenceComputer scienceSagittal planeComputer visionAffine transformationPattern recognition (psychology)Data setNeuroimagingParametric statisticsMathematicsMedicineRadiology

Abstract

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Introduction: The purpose of multimodal and co-registration In MR Neuroimaging is to fuse two or more sets images (T1, T2, fMRI, DTI, pMRI, …) for combining the different information into a composite correlated data set in order to visualization, re-alignment and generating transform to functional Matrix. Multimodal registration and motion correction in spinal cord MR Neuroimaging data, often performed using affine and rigid transformations constrained in the axial or sagittal plane. However, since spinal cord geometry is articulated and respiration is a cause of slice-wise related shifts along the phase-encoding direction, non- rigid registration has been proposed. We tested a number of options for registration of multi- parameter spinal cord data (functional EPI/FSE data and Anatomic T2 SPACE). A result of the registration process is used to fuse information of MRI and fMRI and our technique that based on an efficient non-parametric image registration could be done in a semi-automated fashion, and alignment to the template cord performed using. Materials and Methods: For a single subject, the functional MRI data set (EPI/T2*, FSE/T2) and diffusion (EPI) have been registered with anatomic images and standard space by multi- modal non-parametric registration algorithm. This algorithm is performed with different cost function (mutual information, normalized correlation, and least-square) and slice regularization along with cord. Registration results are compared two kinds of similarity measures; mutual information (MI) and correlation ratio (CR). To evaluate the performance of non-parametric technique, anatomical regions (Cervical and Lumbar spine) and image qualities, data were acquired in 18 data-set include Axial EPI-fMRI (TE/TR: 125/1250 mS, Matrix: 128×128), Sagittal FSE-fMRI (TE/TR: 76/750 mS, Matrix: 256×256). We used random Gaussian noise for two FSE dataset for exam our technique. Results: Numerical measurements of the different cost function and slice regularization method for the sagittal FSE-fMRI and Axial GRE-EPI-fMRI data have been shown average MI=796.2, CR=0.73 for non-parametric and MI=864, CR=0.81 for multi-modal registration with normalized correlation + slice regularization. It can be concluded that the MI cost function produces better results when the images have good quality and the normalized correlation measure is more suitable for noisy images. Conclusion: The optimized co-registration that was used is based on the slice by slice regularization along with the spinal cord in the spatial domain. Two similarity measures; correlation ratio and mutual information were used and results were compared with the results of the different measures of non-parametric registration. It was shown that for human MR Neuroimaging data the multi-modal non-parametric registration with normalized correlation cost function + regularization produces better results in terms of accuracy and time compared to parameters in the co-registration for both similarity measures. Also, it was shown that for noisy Sagittal FSE/fMRI images better registration results are produced when normalized correlation is used as the similarity measure.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.987
Threshold uncertainty score0.448

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.063
GPT teacher head0.381
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2018
Admission routes1
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