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Record W3065630765 · doi:10.1089/ind.2019.0023

Heterologous Expression of <i>Vitreoscilla</i> Hemoglobin in <i>Pseudomonas putida</i> KT2440 for the Production of <i>mcl</i> -PHA in Carbon-Limited Fermentations

2020· article· en· W3065630765 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueIndustrial Biotechnology · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicHemoglobin structure and function
Canadian institutionsQueen's University
Fundersnot available
KeywordsPseudomonas putidaPlasmidBiologyHeterologousEscherichia coliRecombinant DNAHeterologous expressionPolyhydroxyalkanoatesOverproductionFermentationMetabolic engineeringPseudomonasMicrobiologyBiochemistryBacteriaGeneGenetics

Abstract

fetched live from OpenAlex

The heterologous expression of Vitreoscilla hemoglobin (VHb) is known to enhance short-chain-length (scl) and short-chain-length-medium-chain-length (scl-mcl) polyhydroxyalkanoate (PHA) production in Escherichia coli, Aeromonas hydrophila and Pseudomonas putida, but has not been evaluated for the production of medium-chain-length (mcl) PHA in pseudomonads. Three recombinant strains of P. putida KT2440 were constructed, harboring pBBR1MCS-2 expression plasmids containing 0, 1 and 2 copies of the vgb gene. The vgb gene was placed under the control of the lac promoter, which conferred constitutive expression of vgb, since no lac repressor was produced. Mcl-PHA production was assessed in nonanoic acid-limited, fed-batch fermentations with exponential feeding. Although the VHb levels in the engineered strains were comparable to those observed in vgb-bearing pseudomonads, the recombinant strains had lower biomass production, PHA accumulation, volumetric productivity and product yield when compared to the wild-type strain. The performance of the plasmid-harboring strains decreased with increasing vgb copy numbers, presumably due to an increased metabolic burden arising from plasmid expression. All the fermentations ended at similar times due to insufficient oxygen supply and subsequent uncontrollable foaming, demonstrating that VHb production did not alleviate oxygen limitation. These results indicate that the effectiveness of VHb engineering must be assessed on a case-by-case basis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.623

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.246
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it