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Record W3081739484 · doi:10.5376/tgmb.2020.10.0005

Characterization of Genomic Microsatellite Markers and Analysis of Pollen Donors Number for Single Cone of Chinese fir

2020· article· en· W3081739484 on OpenAlex
Kuipeng Li, Chen Shichang, Leiming Dong, Liang Ji, Daixi Chen, Huang KaiYong

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueTree Genetics and Molecular Breeding · 2020
Typearticle
Languageen
FieldEnvironmental Science
TopicForest ecology and management
Canadian institutionsnot available
FundersChinese Academy of Forestry
KeywordsBiologyMicrosatelliteCunninghamiaLoss of heterozygosityPollenGenomeAlleleGeneticsBotanyGene

Abstract

fetched live from OpenAlex

Chinese fir [ Cunninghamia lanceolate (Lamb.) Hook] is one of the most important indigenous timber tree species in China. The aim of the present work is to characterize simple sequence repeat (SSR) loci derived from the specific length amplified fragment sequencing (SLAF) data of the genome and to investigate the number of pollen donors for per cone was with novel SSR markers of low-frequency null alleles. A total of 58855 SLAF-SSR with frequency of 42.04 SSR/Mbp were identified in about 1.40 Gb Chinese fir genome. Dinucleotide repeat SSR contributed to 66.4% of the total SSR from SLAF data. The AT/AT and ATG/CAT motifs were predominant in the category of din- and trinucleotide repeat SSR. Low frequencies of null alleles (<5%) were detected at the nine novel SSR markers with average expected heterozygosity of 0.513 and polymorphism information content score of 0.508. The number of tested progeny of a cone was from 4 to 13. It could be 67 pollinizers for 15 cones and the average number of pollen donors per cone was 4.5. The study points out, for the first time, that there are multiple pollen donors for single cone in gymnosperm.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.739
Threshold uncertainty score0.244

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.204
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it