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Record W3082651540 · doi:10.1101/2020.08.31.20185256

Modeling an epidemic in an imaginary small town

2020· preprint· en· W3082651540 on OpenAlexafffund
Graham Bell

Bibliographic record

VenuemedRxiv · 2020
Typepreprint
Languageen
FieldMathematics
TopicCOVID-19 epidemiological studies
Canadian institutionsMcGill University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsBasic reproduction numberTransmission (telecommunications)The ImaginaryDemographyEpidemic modelExtinction (optical mineralogy)PopulationQuarantineSusceptible individualGeographyStatisticsBiologyMathematicsEcologyComputer sciencePsychologyTelecommunicationsSociology

Abstract

fetched live from OpenAlex

ABSTRACT The course of an epidemic in an imaginary small town has been simulated with an agent-based model. The reproduction number R of the virus could be counted directly, and was roughly, but not precisely, exponentially distributed. The number of secondary infections was greater for an infection which was itself one of many secondary infections because of environmental heterogeneity, which created variance of R among sites and could drive the spread of infection, even when global R < 1. Different kinds of intervention were deployed to curtail the spread of infection. Measures applied to the general population, such as closing down sites and services or regulating individual behaviour, did not reduce the total number of individuals infected during the epidemic unless they were maintained until the virus became extinct. This was primarily because measures taken to reduce indirect transmission tended to increase direct transmission, and vice versa. Consequently, the overall effect of any combination of interventions was much less than the sum of their separate effects. On the other hand, the quarantine of infected or exposed individuals was effective in driving the virus to extinction and caused a permanent and substantial reduction in the number of cases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score0.046

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0020.001
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0060.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.485
GPT teacher head0.457
Teacher spread0.028 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes2
Has abstractyes

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Same venuemedRxiv→Same topicCOVID-19 epidemiological studies→French-language works237,207→