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Record W3087468596 · doi:10.1016/j.hal.2020.101902

Morphological and phylogenetic data do not support the split of Alexandrium into four genera

2020· review· en· W3087468596 on OpenAlexaff
Kenneth Neil Mertens, Masao Adachi, Donald M. Anderson, Christine J. Band‐Schmidt, Isabel Bravo, Michael L. Brosnahan, Christopher J. S. Bolch, António J. Calado, M. Consuelo Carbonell-Moore, Nicolas Chomérat, Malte Elbrächter, Rosa Isabel Figueroa, Santiago Fraga, Ismael Gárate‐Lizárraga, Esther Garcés, Haifeng Gu, Gustaaf M. Hallegraeff, Philipp Heß, Mona Hoppenrath, Takeo Horiguchi, Mitsunori Iwataki, Uwe John, Anke Kremp, Jacob Larsen, Chui Pin Leaw, Zhun Li, Po Teen Lim, Wayne Litaker, Lincoln MacKenzie, Estelle Masseret, Kazumi Matsuoka, Øjvind Moestrup, Marina Montresor, Satoshi Nagai, Élisabeth Nézan, Tomohiro Nishimura, Yuri B. Okolodkov, T. Yu. Orlova, Albert Reñé, Nagore Sampedro, Cecilia Teodora Satta, Hyeon Ho Shin, Raffaele Siano, Kirsty F. Smith, Karen A. Steidinger, Yoshihito Takano, Urban Tillmann, Jennifer L. Wolny, Aika Yamaguchi, Shauna A. Murray

Bibliographic record

VenueHarmful Algae · 2020
Typereview
Languageen
FieldEnvironmental Science
TopicMarine Toxins and Detection Methods
Canadian institutionsInnovation Cluster (Canada)
FundersNational Oceanic and Atmospheric AdministrationNOAA ResearchCentres de Recerca de Catalunya
KeywordsPhylogenetic treeBiologyZoologyPhylogeneticsPhylogenetic relationshipEvolutionary biologyGeneticsGene

Abstract

fetched live from OpenAlex

A recently published study analyzed the phylogenetic relationship between the genera Centrodinium and Alexandrium, confirming an earlier publication showing the genus Alexandrium as paraphyletic. This most recent manuscript retained the genus Alexandrium, introduced a new genus Episemicolon, resurrected two genera, Gessnerium and Protogonyaulax, and stated that: "The polyphyly [sic] of Alexandrium is solved with the split into four genera". However, these reintroduced taxa were not based on monophyletic groups. Therefore this work, if accepted, would result in replacing a single paraphyletic taxon with several non-monophyletic ones. The morphological data presented for genus characterization also do not convincingly support taxa delimitations. The combination of weak molecular phylogenetics and the lack of diagnostic traits (i.e., autapomorphies) render the applicability of the concept of limited use. The proposal to split the genus Alexandrium on the basis of our current knowledge is rejected herein. The aim here is not to present an alternative analysis and revision, but to maintain Alexandrium. A better constructed and more phylogenetically accurate revision can and should wait until more complete evidence becomes available and there is a strong reason to revise the genus Alexandrium. The reasons are explained in detail by a review of the available molecular and morphological data for species of the genera Alexandrium and Centrodinium. In addition, cyst morphology and chemotaxonomy are discussed, and the need for integrative taxonomy is highlighted.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.132
GPT teacher head0.353
Teacher spread0.221 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations32
Published2020
Admission routes1
Has abstractno

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