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Record W3092728048 · doi:10.1021/acs.jpca.0c07011

Semicontinuum (Cluster-Continuum) Modeling of Acid-Catalyzed Aqueous Reactions: Alkene Hydration

2020· article· en· W3092728048 on OpenAlexafffund
Darpan H. Patel, Allan L. L. East

Bibliographic record

VenueThe Journal of Physical Chemistry A · 2020
Typearticle
Languageen
FieldComputer Science
TopicComputational Drug Discovery Methods
Canadian institutionsUniversity of Regina
FundersNatural Sciences and Engineering Research Council of CanadaDeutsche ForschungsgemeinschaftCanada Foundation for Innovation
KeywordsAlkeneCatalysisAqueous solutionCluster (spacecraft)ChemistryComputational chemistryOrganic chemistryComputer science

Abstract

fetched live from OpenAlex

An effort is made to reduce the errors of continuum solvation models (CSMs) with semicontinuum modeling to achieve 3 kcal mol –1 agreement with experiment for acid-catalysis activation Gibbs energies. First, two underappreciated CSM issues are reviewed: errors in the CSM solvation Gibbs energies grow beyond 5 kcal mol –1 (i) as ions are made smaller and (ii) as water clusters grow larger. Second, the computational reproduction of the known Gibbs energies (Δ r G and Δ ‡ G ) of the paradigmatic reaction ethene + H 2 O + H 3 O + → TS + → ethanol + H 3 O + is attempted. It is argued that, despite the >5 kcal mol –1 solvation errors for ions, it is possible to employ error cancellation strategies to reduce the errors in the reaction and activation Gibbs energies to 3 kcal mol –1 accuracy. A new 3 kcal mol –1 effect due to solvent-molecule “placement” (confinement from 1 M bulk concentration) was isolated and proved useful. Third, computational reproduction of the known entropies (Δ r S and Δ ‡ S ) of the paradigmatic reaction is attempted using Trouton’s constant and neglect of solvent structure reorganization effects (which must cancel well for this reaction); this worked well for Δ r S but needs empirical correction of ∼11 cal mol –1 K –1 for Δ ‡ S due to solvent disorientation when H 3 O + is consumed. These entropy estimates allow for enthalpy (Δ r H and Δ ‡ H ) estimation from the Gibbs energy values. Fourth, two recommended options, including A + H 3 O + ·2W → [AHOH 2 + ·2W] ‡, are shown to also work well for the activations of propene and isobutene.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.549
Threshold uncertainty score0.393

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.273
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2020
Admission routes2
Has abstractyes

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