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Record W3094700292 · doi:10.1101/2020.11.01.364331

Transfer of Antibiotic Resistance Genes from Gram-positive Bacterium to Gram-negative Bacterium

2020· preprint· en· W3094700292 on OpenAlexaff
Prasanth Manohar, Thamaraiselvan Shanthini, Bülent Bozdoğan, Cecilia Stålsby Lundborg, Ashok J. Tamhankar, Nades Palaniyar, Ramesh Nachimuthu

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2020
Typepreprint
Languageen
FieldMedicine
TopicAntimicrobial Resistance in Staphylococcus
Canadian institutionsSickKids FoundationHospital for Sick ChildrenUniversity of Toronto
FundersVIT University
KeywordsMicrobiologyBiologyBacteriaPlasmidCefotaximeAntibiotic resistanceMeropenemAntibioticsPathogenic bacteriaGeneGenetics

Abstract

fetched live from OpenAlex

Abstract The emergence of antibiotic resistance due to uncontrolled use of antibiotics in non-humans, poses a major threat for treating bacterial infections in humans. Added to this is the possibility of transfer of resistance from Gram-positive bacteria to Gram-negative bacteria. Therefore, the possibility of resistance gene transfer from a non-human originated pathogenic bacterium to a pathogenic bacterium infecting humans needs evaluation. In this study, poultry litter samples collected from Tamil Nadu, India were screened for the presence of meropenem- and cefotaxime-resistant Staphylococcus sciuri . Standard microbiological techniques and 16S rRNA analysis were used to confirm S. sciuri . In the resistant isolates, resistance genes such as bla NDM-1 , bla OXA-48-like , bla KPC , bla VIM , bla IMP and bla CTX-M were screened. Transconjugation studies were performed using donor, S. sciuri and recipient, E. coli AB1157 (Str r ). A total of 26 meropenem-resistant and 24 cefotaxime resistant S. sciuri were isolated from poultry litter samples. The presence of bla NDM-1 (n=2), bla IMP (n=8), bla CTX-M-9 (n=5) and bla CTX-M-2 (n=1) was detected. Transconjugation results confirmed that S. sciuri carrying plasmid-borne resistance gene bla NDM-1 conjugated to E. coli AB1157. The transferability of resistance genes from S. sciuri to E. coli could be another possible reason for spread of antibiotic-resistant bacteria in humans.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.234
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2020
Admission routes1
Has abstractyes

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Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicAntimicrobial Resistance in StaphylococcusFrench-language works237,207