MétaCan
Menu
Back to cohort
Record W3104252249 · doi:10.1029/2020jg006012

Magnetotaxis as an Adaptation to Enable Bacterial Shuttling of Microbial Sulfur and Sulfur Cycling Across Aquatic Oxic‐Anoxic Interfaces

2020· article· en· W3104252249 on OpenAlexaff
Jinhua Li, Peiyu Liu, Jian Wang, Andrew P. Roberts, Yongxin Pan

Bibliographic record

VenueJournal of Geophysical Research Biogeosciences · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGeomagnetism and Paleomagnetism Studies
Canadian institutionsCanadian Light Source (Canada)University of Saskatchewan
FundersAustralian Research CouncilNational Natural Science Foundation of China
KeywordsAnoxic watersMagnetotactic bacteriaGreigiteBiogeochemical cycleSulfurChemistryMagnetosomeBiomineralizationSulfideSulfur cycleSulfateEnvironmental chemistryChemical engineeringMagnetiteBiophysicsPyriteMineralogyBiologyPaleontology

Abstract

fetched live from OpenAlex

Abstract Magnetotactic bacteria (MTB) widely inhabit the oxic‐anoxic interface (OAI) of sediments and water columns, with their motility guided by geomagnetic fields (a behavior known as magnetotaxis). Beside biomineralizing membrane‐enveloped magnetite or greigite nanocrystals called magnetosomes, cells of many MTB groups contain numerous sulfur globules within their cells. Here, by combining transmission electron microscopy and synchrotron‐based scanning transmission X‐ray microscopy, we investigated the cellular structure and chemistry of Candidatus Magnetobacterium casensis (Mcas), a giant rod‐shaped MTB from the Nitrospirae phylum. We find that nitrate‐storing vacuoles and linearly polymeric sulfur globules occur exclusively within some Mcas cells along with magnetosomal magnetite. Genomic prediction indicates that Mcas cells have the potential to oxidize sulfide to sulfate (i.e., S2− → S0 → SO32− → SO42−), to reduce sulfate to sulfide (i.e., SO42− → SO32− → S2−), and to reduce nitrate to NH4+/N2. Together with previous environmental observations, comparative genomic analysis allows us to propose a model for Mcas involving the microbial sulfur cycle across aquatic OAIs based on magnetotaxis. Via directional movement guided by geomagnetic fields, Mcas cells shuttle either upward to upper microoxic zones for sulfur oxidation and nitrate accumulation in the OAI, or downward to deeper anoxic zones for sulfur deposition by coupling sulfide oxidation and nitrate reduction. Development of magnetotaxis makes MTB an efficient bacterial shuttle for C, N, S, and Fe across aquatic OAI environments and likely contributes significantly to their global biogeochemical cycling. It also benefits cell growth and magnetosomal magnetite formation in MTB.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.044
GPT teacher head0.336
Teacher spread0.292 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations54
Published2020
Admission routes1
Has abstractyes

Explore more

Same venueJournal of Geophysical Research BiogeosciencesSame topicGeomagnetism and Paleomagnetism StudiesFrench-language works237,207