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Abstract PO-051: Metabolic alterations reveal epigenetic vulnerabilities in breast cancer

2020· article· en· W3106821130 on OpenAlexaff
Geneviève Deblois

Bibliographic record

VenueCancer Research · 2020
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer, Lipids, and Metabolism
Canadian institutionsUniversité de Montréal
Fundersnot available
KeywordsEpigeneticsBreast cancerCancerCancer researchBiologyDNA methylationEpigenetic therapyChromatinCancer epigeneticsCancer cellChromatin remodelingHistoneMedicineBioinformaticsGeneticsHistone methyltransferaseDNAGeneGene expression

Abstract

fetched live from OpenAlex

Abstract Tumor progression and therapeutic resistance in cancer are characterized by changes in cell identity, which is regulated in part by the epigenetic landscape of the cells. Alterations in metabolic profiles can contribute to changes in cell fate during tumor progression through remodelling of chromatin landscapes. We show that chemoresistance in triple-negative breast cancer is characterized by altered cellular metabolism, impacting the levels of metabolites required for DNA and histone methylation. Using models of chemotherapy resistance breast cancer, we have identified metabolic and epigenetic dependencies specific to drug-resistant breast cancer cells. We show that the remodelling of epigenetic states upon chemotherapy-induced metabolic stress can contribute to drug resistance in breast cancer cells by enabling the maintenance of transposable element repression and preventing the induction of cytotoxic stress-induced viral mimicry. While these metabolic and epigenetic changes contribute to the enhanced tumorigenic fitness of chemo resistant breast cancer, they reveal epigenetic vulnerabilities that can be therapeutically targeted in drug-resistant tumors. Citation Format: Genevieve Deblois. Metabolic alterations reveal epigenetic vulnerabilities in breast cancer [abstract]. In: Abstracts: AACR Special Virtual Conference on Epigenetics and Metabolism; October 15-16, 2020; 2020 Oct 15-16. Philadelphia (PA): AACR; Cancer Res 2020;80(23 Suppl):Abstract nr PO-051.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.020
Threshold uncertainty score0.068

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0200.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.052
GPT teacher head0.372
Teacher spread0.320 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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