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Record W3111014536 · doi:10.1002/alz.040586

Accounting for systematic spatiotemporal variation improves connectome‐based models of tau spreading in human Alzheimer’s disease

2020· article· en· W3111014536 on OpenAlexaff
Jacob W. Vogel, Alexandra L. Young, Neil P. Oxtoby, Ruben Smith, Rik Ossenkoppele, Leon Aksman, Olof Strandberg, Renaud La Joie, Michel J. Grothe, Gil D. Rabinovici, Daniel C. Alexander, Alan C. Evans, Oskar Hansson

Bibliographic record

VenueAlzheimer s & Dementia · 2020
Typearticle
Languageen
FieldMedicine
TopicAdvanced Neuroimaging Techniques and Applications
Canadian institutionsMcGill UniversityMontreal Neurological Institute and Hospital
Fundersnot available
KeywordsConnectomeEntorhinal cortexContext (archaeology)Human Connectome ProjectNeuroscienceTractographyInferenceComputer scienceDiffusion MRIBiologyPsychologyArtificial intelligenceHippocampusFunctional connectivityMedicineMagnetic resonance imaging

Abstract

fetched live from OpenAlex

Abstract Background Studies in cells, animals and humans have each provided evidence that, in an Alzheimer’s disease (AD) context, tau may be spreading through the brain transneuronally. This information may be useful for modeling the spread of tau in humans. However, such models are confounded by the substantial heterogeneity in spreading patterns observed in AD. In this talk, I will discuss i) application of an epidemic spreading model (ESM) to tau‐PET data to model the spread of tau through the human connectome; ii) application of a spatiotemporal subtyping algorithm to identify separable tau‐spreading patterns; 3) how accounting for these heterogeneous patterns can improve connectome‐based models. Method The ESM simulates diffusion of an agent through a system of connected brain regions measured with diffusion tractography. We compare simulations across 312 individuals to observed tau‐PET data. We next use the Subtype and Staging Inference (SuStaIn), an algorithm combining disease progression models with clustering, to identify spatiotemporal subtypes of tau spreading across 1143 individuals. We describe demographic, cognitive and genetic associations with each subtype, and evaluate their stability over time and across different radiotracers. Finally, we apply the ESM separately to each AD subtype to assess whether overall model accuracy is improved by accounting for individual subtype. Result The best‐fitting ESM used the entorhinal cortex as the model epicenter, and explained 70% of the variance in the overall tau‐PET pattern across subjects. SuStaIn identified four spatiotemporal subtypes with differing tau‐PET patterns and phenotypic profiles: Limbic‐predominant, limbic‐sparing, posterior, and lateral‐temporal. These same four subtypes were observed in a separate cohort using a different radiotracer (similarity 0.7‐0.9). 86% of subjects exhibited the same subtype at follow‐up. The ESM selected a different epicenter for each subtype, and accounting for subtype‐specific variation resulted in a 17% improvement in model performance. Conclusion Connectome‐based models explain the majority of spatial variation in tau‐PET patterns. However, a one‐size‐fits‐all approach fails to account for heterogeneity of tau‐spreading patterns. Four stable phenotypes were observed, which may be characterized by vulnerability of different cortico‐limbic networks. Accounting for this heterogeneity will be necessary for any predictive modeling of tau spreading moving forward.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.036
Threshold uncertainty score0.071

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.009
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.115
GPT teacher head0.357
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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