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Record W3118831394 · doi:10.1101/2021.01.04.425314

AusTraits – a curated plant trait database for the Australian flora

2021· preprint· en· W3118831394 on OpenAlexaff
Daniel S. Falster, Rachael V. Gallagher, Elizabeth Wenk, Ian J. Wright, Dony Indiarto, Caitlan Baxter, Samuel C. Andrew, James R. Lawson, Stuart Allen, Anne Fuchs, Mark A. Adams, Collin W. Ahrens, Matthew Alfonzetti, Tara Angevin, Owen K. Atkin, Tony D. Auld, Andrew G. Baker, A. R. Bean, Chris J. Blackman, Keith J. Bloomfield, David M. J. S. Bowman, Jason G. Bragg, Timothy J. Brodribb, Genevieve Buckton, Geoff Burrows, Elizabeth Caldwell, James Camac, Raymond J. Carpenter, Jane A. Catford, Gregory R. Cawthray, Lucas A. Cernusak, Gregory Chandler, Alex R. Chapman, David Cheal, Alexander W. Cheesman, Si‐Chong Chen, Brendan Choat, Brook Clinton, Peta L. Clode, Helen G. Coleman, William K. Cornwell, Meredith Cosgrove, Michael D. Crisp, Erika Cross, Kristine Y. Crous, Saul A. Cunningham, Ellen M. Curtis, Matthew I. Daws, Jane L. DeGabriel, Matthew D. Denton, Ning Dong, Honglang Duan, David H. Duncan, Richard P. Duncan, Marco F. Duretto, John M. Dwyer, C.R. Edwards, Manuel Esperón‐Rodríguez, John R. Evans, Susan E. Everingham, Jennifer Firn, Carlos Roberto Fonseca, Ben J. French, Doug Frood, Jennifer L. Funk, Sonya R. Geange, Oula Ghannoum, Sean M. Gleason, Carl R. Gosper, Emma F. Gray, Philip K. Groom, C. L. Gross, Greg R. Guerin, Lydia K. Guja, Amy K. Hahs, Matthew Tom Harrison, Patrick E. Hayes, Martin L. Henery, Dieter F. Hochuli, Jocelyn Howell, Guomin Huang, Lesley Hughes, John M. Huisman, Jugoslav Ilic, Ashika Jagdish, Daniel Jin, Gregory J. Jordan, Enrique Jurado, Sabine Kasel, Jürgen Kellermann, Michele Kohout, Robert M. Kooyman, Martyna M. Kotowska, Hao Ran Lai, Étienne Laliberté, Hans Lambers, Byron B. Lamont, Robert Lanfear, Frank van Langevelde, Daniel C. Laughlin, Bree-Anne Laugier-Kitchener, Caroline E. R. Lehmann, Andrea Leigh, Michelle R. Leishman, Tanja I. Lenz, Brendan J. Lepschi, James D. Lewis, Felix K. S. Lim, Udayangani Liu, Janice M. Lord, Christopher H. Lusk, Cate Macinnis‐Ng, Hannah McPherson, Anthony Manea, Margaret M. Mayfield, James K. McCarthy, Trevor L. Meers, Marlien van der Merwe, Daniel J. Metcalfe, Per Milberg, Karel Mokany, Angela T. Moles, Ben D. Moore, Nicholas Moore, John W. Morgan, William K. Morris, Annette Muir, Samantha Munroe, Áine Nicholson, Dean Nicolle, Adrienne B. Nicotra, Ülo Niinemets, Tom North, Andrew O’Reilly‐Nugent, Odhran S. O’Sullivan, Brad Oberle, Yusuke Onoda, Mark K. J. Ooi, Colin P. Osborne, Grazyna Paczkowska, Burak K. Pekin, Caio Guilherme Pereira, Catherine Marina Pickering, Melinda Pickup, Laura J. Pollock, Pieter Poot, Jeff R. Powell, Sally A. Power, I. Colin Prentice, Lynda D. Prior, Suzanne M. Prober, Jennifer Read, Victoria Reynolds, Anna E. Richards, Ben Richardson, Michael L. Roderick, Julieta A. Rosell, Maurizio Rossetto, Barbara Lynette Rye, Paul D. Rymer, Michael A. Sams, Gordon D. Sanson, Susanne Schmidt, Ernst‐Detlef Schulze, Kerrie M. Sendall, Steve J. Sinclair, Benjamin Smith, Renee Smith, Fiona M. Soper, Ben Sparrow, Rachel J. Standish, Timothy L. Staples, Guy M. Taseski, Freya Thomas, David T. Tissue, Mark G. Tjoelker, David Y. P. Tng, Kyle W. Tomlinson, Neil C. Turner, Erik J. Veneklaas, Susanna Venn, Peter A. Vesk, Carolyn Vlasveld, Maria S. Vorontsova, Charles R. Warren, Lasantha K. Weerasinghe, Mark Westoby, Matthew White, Nicholas S. G. Williams, Jarrah Wills, Peter G. Wilson, Colin J. Yates, Amy E. Zanne, Kasia Ziemińska

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsMcGill UniversityUniversité de Montréal
FundersAustralian Research Data CommonsNSW Department of Planning,Industry and EnvironmentAustralian Research CouncilSoochow UniversityDepartment of Biodiversity, Conservation and AttractionsCentre for Australian National Biodiversity ResearchMacquarie UniversityDepartment of Environment, Land, Water and Planning, State Government of Victoria
KeywordsTaxonTraitFlora (microbiology)BiologyScope (computer science)EcologyGenusGeographyDatabaseComputer sciencePaleontology

Abstract

fetched live from OpenAlex

Abstract We introduce the AusTraits database - a compilation of measurements of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 375 traits across 29230 taxa from field campaigns, published literature, taxonomic monographs, and individual taxa descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological parameters (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual-, species- and genus-level observations coupled to, where available, contextual information on site properties. This data descriptor provides information on version 2.1.0 of AusTraits which contains data for 937243 trait-by-taxa combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data to increase our collective understanding of the Australian flora.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.694
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0170.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.043
GPT teacher head0.247
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations44
Published2021
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicSpecies Distribution and Climate ChangeFrench-language works237,207