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Record W31192640 · doi:10.1037/dev0000771

Regulation of polarized transport in C. elegans neurons

2013· dissertation· en· W31192640 on OpenAlexfundno aff
E. Moustakidou

Bibliographic record

VenueDevelopmental Psychology · 2013
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics, Aging, and Longevity in Model Organisms
Canadian institutionsnot available
FundersSocial Sciences and Humanities Research Council of Canada
KeywordsCaenorhabditis elegansNeuroscienceCell biologyBiologyBiophysicsGeneticsGene

Abstract

fetched live from OpenAlex

During neuronal development, neuron cells become asymmetric and form molecularly and functionally distinct areas. These areas are the cell body, a single axon and multiple dendrites. Initiation and maintenance of neuronal asymmetry strongly relies on cytoskeleton dynamics and rearrangements, as well as the polarized distribution of cellular components to the right neuron compartments. The role of the cytoskeleton in neuronal polarity has captured the attention of scientist in the past decade, resulting in notable discoveries of molecular regulatory pathways controlling establishment and maintenance of neuronal polarity. The aim of this thesis is to provide an overview of the current knowledge on neuronal polarity. In detail I will focus on the interaction of motor-proteins, kinases and cargo receptors and their role in achieving and maintaining neuronal polarity. In terms of neuronal polarity I will distinguish between cytoskeletal dynamics, organization and polarized trafficking with a focus on C. elegans. The main regulatory proteins involved in these processes are the kinases CDK-5 and UNC-51/ULK1, the motor proteins UNC-116/KHC and UNC-104/Kif1A, the “cargo” receptor proteins UNC-33/CRMP-2, UNC-16/JIP3 and UNC-14, as well as the akyrin-like protein UNC-44. The main problem I identified while summarizing the current knowledge, are ambiguous results of different labs. Especially the comparability of experiments conducted in different neurons and/or various stages of development is not straight forward.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.270
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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