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Boosting Segmentation Performance across Datasets using Histogram Specification with Application to Pelvic Bone Segmentation

2021· preprint· en· W3122665769 on OpenAlexafffund
Prabhakara Subramanya Jois, Aniketh Manjunath, Thomas Fevens

Bibliographic record

Venue2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · 2021
Typepreprint
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsConcordia University
FundersMitacs
KeywordsSegmentationComputer scienceArtificial intelligenceDeep learningBoosting (machine learning)HistogramDicePattern recognition (psychology)Machine learningImage (mathematics)

Abstract

fetched live from OpenAlex

Accurate segmentation of the pelvic computerized tomography (CT) imaging is crucial for the clinical diagnosis of pelvic bone diseases and for planning patient-specific hip surgeries. Several methodologies have been proposed for such segmentation tasks with the emergence and advancements of deep learning for digital healthcare. But in a low data scenario, the lack of abundant data needed to train a Deep Neural Network is a significant bottleneck. In this work, we propose a methodology based on modulation of image tonal distributions and deep learning to boost the performance of networks trained on limited data. The strategy involves pre-processing of test data through histogram specification. This simple yet effective approach can be viewed as a style transfer methodology. The segmentation task uses a U-Net configuration with an EfficientNet-B0 backbone, optimized using an augmented BCE-IoU loss function. This configuration is validated on a total of 284 images taken from two publicly available CT datasets, The Cancer Imaging Archive (TCIA) and the Visible Human Project (VHBD). The average performance measures for the Dice coefficient and Intersection over Union are 95.7% and 91.9%, respectively, which give strong evidence for the effectiveness of the approach, which is highly competitive with state-of-the-art methodologies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.010
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.020

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.010
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.002
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0020.002
Research integrity0.0020.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.050
GPT teacher head0.360
Teacher spread0.310 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes2
Has abstractyes

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