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Record W3128456160 · doi:10.1016/j.ejca.2020.12.023

Clinical practice guidelines for BRCA1 and BRCA2 genetic testing

2021· review· en· W3128456160 on OpenAlexaff
Pascal Pujol, Massimo Barberis, Philp Beer, Eitan Friedman, Josep M. Piulats, Ettore Capoluongo, Jesús García‐Foncillas, Isabelle Ray‐Coquard, Frédérique Penault‐Llorca, William D. Foulkes, Clare Turnbull, Helen Hanson, Steven A. Narod, Banu Arun, Matti Aapro, Jean‐Louis Mandel, Nicola Normanno, Diether Lambrechts, Ignace Vergote, Michèle Anahory, Bernard Baertschi, Karen Baudry, Yves–Jean Bignon, Marc A. Bollet, Carole Corsini, Olivier Cussenot, Thibault De La Motte Rouge, Marie Duboys de Labarre, Florence Duchamp, Clarisse Duriez, Karim Fizazi, Virginie Galibert, Laurence Gladieff, Joseph Gligorov, Pascal Hammel, Marion Imbert‐Bouteille, William Jacot, Tatiana Kogut-Kubiak, Pierre‐Jean Lamy, Sophie Nambot, Y. Neuzillet, Sylviane Olschwang, Xavier Rébillard, Jean‐Marc Rey, Chloé Rideau, Jean-Philippe Spano, Frédéric Thomas, Isabelle Treilleux, Marion Vandromme, Julie A. Vendrell, Michèle Vintraud, D. Zarca, Kevin S. Hughes, Jose Enrique Alés Martínez

Bibliographic record

VenueEuropean Journal of Cancer · 2021
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBRCA gene mutations in cancer
Canadian institutionsMcGill UniversityPublic Health OntarioWomen's College HospitalUniversity of TorontoJewish General Hospital
FundersCancer Research UK
KeywordsMedicineGenetic testingBreast cancerClinical PracticeCancerOncologyFamily medicineIntensive care medicineInternal medicine

Abstract

fetched live from OpenAlex

BRCA1 and BRCA2 gene pathogenic variants account for most hereditary breast cancer and are increasingly used to determine eligibility for PARP inhibitor (PARPi) therapy of BRCA-related cancer. Because issues of BRCA testing in clinical practice now overlap with both preventive and therapeutic management, updated and comprehensive practice guidelines for BRCA genotyping are needed. The integrative recommendations for BRCA testing presented here aim to (1) identify individuals who may benefit from genetic counselling and risk-reducing strategies; (2) update germline and tumour-testing indications for PARPi-approved therapies; (3) provide testing recommendations for personalised management of early and metastatic breast cancer; and (4) address the issues of rapid process and tumour analysis. An international group of experts, including geneticists, medical and surgical oncologists, pathologists, ethicists and patient representatives, was commissioned by the French Society of Predictive and Personalised Medicine (SFMPP). The group followed a methodology based on specific formal guidelines development, including (1) evaluating the likelihood of BRCAm from a combined systematic review of the literature, risk assessment models and expert quotations, and (2) therapeutic values of BRCAm status for PARPi therapy in BRCA-related cancer and for management of early and advanced breast cancer. These international guidelines may help clinicians comprehensively update and standardise BRCA testing practices.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Systematic review · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.011
Threshold uncertainty score0.036

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.009
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0040.003
Science and technology studies0.0000.001
Scholarly communication0.0020.002
Open science0.0030.001
Research integrity0.0050.004
Insufficient payload (model declined to judge)0.0110.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.216
GPT teacher head0.501
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSystematic review
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations175
Published2021
Admission routes1
Has abstractno

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Same venueEuropean Journal of CancerSame topicBRCA gene mutations in cancerFrench-language works237,207