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Record W3139002832 · doi:10.1101/2021.03.17.435827

Distance decay 2.0 – a global synthesis of taxonomic and functional turnover in ecological communities

2021· preprint· en· W3139002832 on OpenAlexaff
Caio Graco‐Roza, Sonja Aarnio, Nerea Abrego, Alicia Teresa Rosario Acosta, Janne Alahuhta, Jan Altman, Claudia Angiolini, Jukka Aroviita, Fabio Attorre, Lars Baastrup‐Spohr, José Juan Barrera-Alba, Jonathan Belmaker, Idoia Biurrun, Gianmaria Bonari, Helge Bruelheide, Sabina Burrascano, Marta Carboni, Pedro Cardoso, José C. Carvalho, Giuseppe Castaldelli, Morten Christensen, Gilsineia Corrêa, Iwona Dembicz, Jürgen Dengler, Jiří Doležal, Patrícia Domingos, Tibor Erős, Carlos Eduardo Leite Ferreira, Goffredo Filibeck, Sergio R. Floeter, Alan M. Friedlander, Johanna Gammal, Anna Gavioli, Martin M. Goßner, Itai Granot, Riccardo Guarino, Camilla Gustafsson, Brian Hayden, Siwen He, Jacob Heilmann‐Clausen, Jani Heino, John T. Hunter, Vera L. M. Huszar, Monika Janišová, Jenny Jyrkänkallio‐Mikkola, Kimmo K. Kahilainen, Julia Kemppinen, Łukasz Kozub, Carla Kruk, Michel Kulbiki, Анна Куземко, Peter C. le Roux, Aleksi Lehikoinen, Domênica Teixeira de Lima, Angel Lopes-Urrutia, Balázs Lukács, Miska Luoto, Stefano Mammola, Marcelo Manzi Marinho, Luciana da Silva Menezes, Marco Milardi, Marcela Miranda, Gleyci Aparecida Oliveira Moser, Joerg Mueller, Pekka Niittynen, Alf Norkko, Arkadiusz Nowak, Jean Pierre Ometto, Otso Ovaskainen, Gerhard E. Overbeck, F. Pacheco, Virpi Pajunen, Salza Palpurina, Félix Picazo, Juan Antonio Campos, Iván F. Rodil, Francesco María Sabatini, Shira Salingré, Michele De Sanctis, Ángel M. Segura, Lúcia Helena Sampaio da Silva, Z. D. Stevanović, Grzegorz Swacha, Anette Teittinen, Kimmo Tolonen, Ioannis Tsiripidis, Leena Virta, Beixin Wang, Jianjun Wang, Wolfgang W. Weisser, Yuan Xu, Janne Soininen

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsUniversity of New Brunswick
FundersDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigFundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de JaneiroCoordenação de Aperfeiçoamento de Pessoal de Nível SuperiorDeutsche Forschungsgemeinschaft
KeywordsDistance decayBeta diversityLatitudeSpatial ecologyEcosystemOrdinationEcologyGeographical distanceSpatial heterogeneitySimilarity (geometry)Exponential decaySpatial variabilityBiodiversityEnvironmental scienceBiologyGeographyMathematicsStatisticsComputer sciencePhysicsArtificial intelligence

Abstract

fetched live from OpenAlex

Abstract Understanding the variation in community composition and species abundances, i.e., β-diversity, is at the heart of community ecology. A common approach to examine β-diversity is to evaluate directional turnover in community composition by measuring the decay in the similarity among pairs of communities along spatial or environmental distances. We provide the first global synthesis of taxonomic and functional distance decay along spatial and environmental distance by analysing 149 datasets comprising different types of organisms and environments. We modelled an exponential distance decay for each dataset using generalized linear models and extracted r 2 and slope to analyse the strength and the rate of the decay. We studied whether taxonomic or functional similarity has stronger decay across the spatial and environmental distances. We also unveiled the factors driving the rate of decay across the datasets, including latitude, spatial extent, realm, and organismal features. Taxonomic distance decay was stronger along spatial and environmental distances compared with functional distance decay. The rate of taxonomic spatial distance decay was the fastest in the datasets from mid-latitudes while the rate of functional decay increased with latitude. Overall, datasets covering larger spatial extents showed a lower rate of decay along spatial distances but a higher rate of decay along environmental distances. Marine ecosystems had the slowest rate of decay. This synthesis is an important step towards a more holistic understanding of patterns and drivers of taxonomic and functional β-diversity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.008
metaresearch head score (Gemma)0.023
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Meta-analysis · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.043

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0080.023
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0060.006
Science and technology studies0.0000.001
Scholarly communication0.0030.003
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.200
Teacher spread0.187 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designMeta-analysis
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2021
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicEcology and Vegetation Dynamics Studies→French-language works237,207→