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Record W3139280509 · doi:10.1186/s13023-021-01777-6

Correction to: A guide to writing systematic reviews of rare disease treatments to generate FAIRcompliant datasets: building a Treatabolome

2021· erratum· en· W3139280509 on OpenAlexaff
António Atalaia, Rachel Thompson, Alberto Corvò, Leigh Carmody, Davide Piscia, Leslie Matalonga, Alfons Macaya, Angela Lochmüller, Bertrand Fontaine, Birte Zurek, Carles Hernandéz-Ferrer, Carola Reinhard, David Gómez‐Andrés, Jean‐François Desaphy, Katherine Schon, Katja Lohmann, Matthew J. Jennings, Matthis Synofzik, Olaf Rieß, Rabah Ben Yaou, Teresinha Evangelista, Thiloka Ratnaike, Virginie Bros‐Facer, Gulcin Gumus, Rita Horváth, Patrick F. Chinnery, Steven Laurie, Holm Graeßner, Peter N. Robinson, Hanns Lochmüller, Sergi Beltrán, Gisèle Bonne

Bibliographic record

VenueOrphanet Journal of Rare Diseases · 2021
Typeerratum
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsUniversity of OttawaOttawa HospitalChildren's Hospital of Eastern Ontario
FundersMedical Research CouncilNational Institute for Health and Care ResearchAtaxia UKWellcome Trust
KeywordsHuman geneticsData scienceComputational biologyComputer scienceInformation retrievalBioinformaticsMedicineBiologyGenetics

Abstract

fetched live from OpenAlex

An amendment to this paper has been published and can be accessed via the original article.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.083
metaresearch head score (Gemma)0.608
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.917
Threshold uncertainty score0.696

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0830.608
Meta-epidemiology (narrow)0.0040.003
Meta-epidemiology (broad)0.0050.006
Bibliometrics0.0160.015
Science and technology studies0.0040.004
Scholarly communication0.0100.007
Open science0.0060.007
Research integrity0.0090.016
Insufficient payload (model declined to judge)0.2080.091

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.340
Teacher spread0.319 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainMethods
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

Explore more

Same venueOrphanet Journal of Rare DiseasesSame topicRadiomics and Machine Learning in Medical ImagingFrench-language works237,207