Predictive Ecology: a Re-imagined Foundation and Toolkit for Ecological Models
Bibliographic record
Abstract
Prediction from models and data in Ecology has a long history and can be made from many types of statistical, simulation, and other classes of models. To date, our ability to use the predictive approach as a tool for developing, validating, updating, integrating and applying models across scientific disciplines and to influence management decisions, policies and the public has been hampered by disparate perspectives on prediction and inadequate tools. We present a coherent perspective that follows a Predictive Ecology approach based on 5 principles: Reusable, Freely available and Interoperable models, built around a Continuous workflow, which are Tested automatically (PERFICT). We describe the SpaDES toolkit that helps implement these principles. We outline some benefits for society of working with these principles, including 1) speeding up scientific advances; 2) data science advances; and 3) improving science-policy integration.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.014 | 0.029 |
| Meta-epidemiology (narrow) | 0.001 | 0.002 |
| Meta-epidemiology (broad) | 0.002 | 0.003 |
| Bibliometrics | 0.003 | 0.004 |
| Science and technology studies | 0.002 | 0.006 |
| Scholarly communication | 0.010 | 0.019 |
| Open science | 0.008 | 0.015 |
| Research integrity | 0.003 | 0.014 |
| Insufficient payload (model declined to judge) | 0.009 | 0.009 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".