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Record W3148523720 · doi:10.1038/s41467-021-22265-2

Identifying multiple sclerosis subtypes using unsupervised machine learning and MRI data

2021· article· en· W3148523720 on OpenAlex
Arman Eshaghi, Alexandra L. Young, P. A. Wijeratne, Ferrán Prados, Douglas L. Arnold, Sridar Narayanan, Charles R.G. Guttmann, Frederik Barkhof, Daniel C. Alexander, Alan J. Thompson, Declan Chard, Olga Ciccarelli

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueNature Communications · 2021
Typearticle
Languageen
FieldMedicine
TopicMultiple Sclerosis Research Studies
Canadian institutionsMcGill UniversityMontreal Neurological Institute and Hospital
FundersNational Institute of Mental HealthCanadian Institutes of Health ResearchEMD SeronoMedDay PharmaceuticalsEisaiUniversity College LondonMultiple Sclerosis Society of CanadaGenentechNational Multiple Sclerosis SocietyInternational Progressive MS AllianceMyelin Repair FoundationIXICONIH Blueprint for Neuroscience ResearchMultiple Sclerosis TrustMultiple Sclerosis SocietyEuropean Committee for Treatment and Research in Multiple SclerosisAmerican Academy of NeurologyF. Hoffmann-La RochePfizerBiogenMcDonnell Center for Systems NeuroscienceCelgeneNational Institute for Health and Care ResearchMedical Research CouncilTeva Pharmaceutical IndustriesDepartment of Health and Social CareEngineering and Physical Sciences Research CouncilAcorda TherapeuticsUniversity College London Hospitals NHS Foundation TrustNational Institutes of HealthRosetrees TrustEuropean CommissionSanofi
KeywordsMultiple sclerosisMedicineWhite matterLesionClinical trialLimitingHyperintensityPathologyMachine learningMagnetic resonance imagingBioinformaticsNeurosciencePsychologyComputer scienceRadiologyBiologyPsychiatry

Abstract

fetched live from OpenAlex

Multiple sclerosis (MS) can be divided into four phenotypes based on clinical evolution. The pathophysiological boundaries of these phenotypes are unclear, limiting treatment stratification. Machine learning can identify groups with similar features using multidimensional data. Here, to classify MS subtypes based on pathological features, we apply unsupervised machine learning to brain MRI scans acquired in previously published studies. We use a training dataset from 6322 MS patients to define MRI-based subtypes and an independent cohort of 3068 patients for validation. Based on the earliest abnormalities, we define MS subtypes as cortex-led, normal-appearing white matter-led, and lesion-led. People with the lesion-led subtype have the highest risk of confirmed disability progression (CDP) and the highest relapse rate. People with the lesion-led MS subtype show positive treatment response in selected clinical trials. Our findings suggest that MRI-based subtypes predict MS disability progression and response to treatment and may be used to define groups of patients in interventional trials.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.379
Threshold uncertainty score0.684

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.003
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.255
GPT teacher head0.410
Teacher spread0.155 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it