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Record W3156358523 · doi:10.3390/biology10040328

Haslea silbo, A Novel Cosmopolitan Species of Blue Diatoms

2021· article· en· W3156358523 on OpenAlexafffund
Romain Gastineau, Gert H. Hansen, Michel Poulin, Claude Lemieux, Monique Turmel, Jean‐François Bardeau, Vincent Leignel, Yann Hardivillier, Michèle Morançais, Joël Fleurence, Pierre Gaudin, Vona Méléder, Eileen J. Cox, Н. А. Давидович, Olga I. Davidovich, Andrzej Witkowski, Irena Kaczmarska, James M. Ehrman, Emilio Soler Onís, Antera Martel Quintana, Maja Mucko, Solenn Mordret, Diana Sarno, Boris Jacquette, Charlotte Falaise, Julie Séveno, Niels Lindquist, Philip S. Kemp, Elif Eker‐Develi, Merve Konucu, Jean‐Luc Mouget

Bibliographic record

VenueBiology · 2021
Typearticle
Languageen
FieldMaterials Science
TopicDiatoms and Algae Research
Canadian institutionsUniversité LavalMount Allison UniversityCanadian Museum of Nature
FundersMinistry of Science and Higher Education of the Russian FederationSeventh Framework ProgrammeStazione Zoologica Anton DohrnNatural Sciences and Engineering Research Council of CanadaEuropean CommissionHrvatska Zaklada za ZnanostCanadian Museum of Nature
KeywordsBiologyPseudogeneGenomeGeneticsPlasmidPlastidPhylogenetic treeORFSGeneEvolutionary biologyOpen reading frame

Abstract

fetched live from OpenAlex

Specimens of a new species of blue diatoms from the genus Haslea Simonsen were discovered in geographically distant sampling sites, first in the Canary Archipelago, then North Carolina, Gulf of Naples, the Croatian South Adriatic Sea, and Turkish coast of the Eastern Mediterranean Sea. An exhaustive characterization of these specimens, using a combined morphological and genomic approach led to the conclusion that they belong to a single new to science cosmopolitan species, Haslea silbo sp. nov. A preliminary characterization of its blue pigment shows similarities to marennine produced by Haslea ostrearia, as evidenced by UV–visible spectrophotometry and Raman spectrometry. Life cycle stages including auxosporulation were also observed, providing data on the cardinal points of this species. For the two most geographically distant populations (North Carolina and East Mediterranean), complete mitochondrial and plastid genomes were sequenced. The mitogenomes of both strains share a rare atp6 pseudogene, but the number, nature, and positions of the group II introns inside its cox1 gene differ between the two populations. There are also two pairs of genes fused in single ORFs. The plastid genomes are characterized by large regions of recombination with plasmid DNA, which are in both cases located between the ycf35 and psbA genes, but whose content differs between the strains. The two sequenced strains hosts three plasmids coding for putative serine recombinase protein whose sequences are compared, and four out of six of these plasmids were highly conserved.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.058
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.308
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations22
Published2021
Admission routes2
Has abstractyes

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