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Record W3158379476 · doi:10.15173/sciential.vi6.2638

role of stathmin microtubule-destabilizing activity in Shigella flexneri motility and tunneling

2021· article· en· W3158379476 on OpenAlexvenueno aff
Robert Rozman, Austin A. Barr, Radha Mohan Sharma

Bibliographic record

VenueSciential - McMaster Undergraduate Science Journal · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEscherichia coli research studies
Canadian institutionsnot available
Fundersnot available
KeywordsStathminShigella flexneriMicrotubuleShigellaMotilityBiologyCell biologyTubulinMicrobiologyCytoskeletonFluorescence microscopeIntracellularBacteriaCellGeneticsFluorescenceEscherichia coliPhysicsGeneOptics

Abstract

fetched live from OpenAlex

The infection of the intestinal mucosa by Shigella bacteria is a global health issue resulting in a variety of potentially life-threatening gastrointestinal complications. Their unique method of intracellular motility depends on microtubule destabilization to clear the dense host cytoskeletal network in a process called tunneling. It is hypothesized that the host protein stathmin may play a role in this process, due to its tubulin-sequestering capability. This proposal aims to provide potential methodologies to elucidate the function of stathmin with respect to Shigella flexneri motility. Three experiments are proposed, involving comparisons between human intestinal epithelial cell strains under varying levels of stathmin expression, each infected with S. flexneri. Respectively, the experiments examine tunnel widths via electron microscopy, microtubule densities via imaging fluorescence correlation spectroscopy, and bacterial movement patterns via live fluorescence microscopy. If microtubule destabilization and movement is impaired in null stathmin strains, as predicted, such findings may inform a novel therapeutic target for Shigellosis by preventing internal spreading. This is particularly significant in our current landscape, as antibiotic-resistant strains of Shigella are growing increasingly prevalent.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.283
Teacher spread0.270 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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