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Record W3162266766 · doi:10.1002/prot.26142

Novel antimicrobial anionic cecropins from the spruce budworm feature a <scp>poly‐L</scp> ‐aspartic acid C‐terminus

2021· article· en· W3162266766 on OpenAlexafffund
Halim Maaroufi, Marianne Potvin, Michel Cusson, Roger C. Lévesque

Bibliographic record

VenueProteins Structure Function and Bioinformatics · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAntimicrobial Peptides and Activities
Canadian institutionsNatural Resources CanadaCanadian Forest ServiceUniversité Laval
FundersCanadian Institutes of Health ResearchOntario GenomicsGenome Canada
KeywordsCationic polymerizationPeptideAntimicrobial peptidesCecropinBiochemistryChemistryAmphiphileAntibacterial activityBiologyBacteriaMolecular biologyGeneticsPolymer chemistryOrganic chemistry

Abstract

fetched live from OpenAlex

Abstract Cecropins form a family of amphipathic α‐helical cationic peptides with broad‐spectrum antibacterial properties and potent anticancer activity. The emergence of bacteria and cancer cells showing resistance to cationic antimicrobial peptides (CAMPs) has fostered a search for new, more selective and more effective alternatives to CAMPs. With this goal in mind, we looked for cecropin homologs in the genome and transcriptome of the spruce budworm, Choristoneura fumiferana . Not only did we find paralogs of the conventional cationic cecropins (Cfcec + ), our screening also led to the identification of previously uncharacterized anionic cecropins (Cfcec − ), featuring a poly‐ l ‐aspartic acid C‐terminus. Comparative peptide analysis indicated that the C‐terminal helix of Cfcec − is amphipathic, unlike that of Cfcec + , which is hydrophobic. Interestingly, molecular dynamics simulations pointed to the lower conformational flexibility of Cfcec − peptides, relative to that of Cfcec + . Phylogenetic analysis suggests that the evolution of distinct Cfcec + and Cfcec − peptides may have resulted from an ancient duplication event within the Lepidoptera. Finally, we found that both anionic and cationic cecropins contain a BH3‐like motif (G‐[KQR]‐[HKQNR]‐[IV]‐[KQR]) that could interact with Bcl‐2, a protein involved in apoptosis; this observation is congruent with previous reports indicating that cecropins induce apoptosis. Altogether, our observations suggest that cecropins may provide templates for the development of new anticancer drugs. We also estimated the antibacterial activity of Cfcec‐2 and a ∆Cfce‐2 peptide as AMPs by testing directly their ability in inhibiting bacterial growth in a disk diffusion assay and their potential for development of novel therapeutics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.138
Threshold uncertainty score0.986

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.194
Teacher spread0.185 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2021
Admission routes2
Has abstractyes

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