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Record W3162350302 · doi:10.1101/2021.05.10.441946

Endoplasmic Reticulum morphological regulation by RTN4/NOGO modulates neuronal regeneration by curbing luminal transport

2021· preprint· en· W3162350302 on OpenAlexaff
Tasuku Konno, Pierre Parutto, David M. Bailey, Valentina Davì, Cécile C. Crapart, Mosab Ali Awadelkareem, Colin Hockings, Aidan I. Brown, Katherine M. Xiang, Anamika Agrawal, Joseph E. Chambers, Molly J Vander Werp, Katherine Koning, Emmanouil Metzakopian, Laura M. Westrate, Elena F. Koslover, Edward Avezov

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2021
Typepreprint
Languageen
FieldNeuroscience
TopicPhotoreceptor and optogenetics research
Canadian institutionsToronto Metropolitan University
FundersMedical Research CouncilAlzheimer's SocietyUK Dementia Research InstituteHoward Hughes Medical InstituteResearch Corporation for Science AdvancementNational Science Foundation
KeywordsEndoplasmic reticulumCell biologyRegeneration (biology)Biology

Abstract

fetched live from OpenAlex

Abstract Cell and tissue functions rely on an elaborate intracellular transport system responsible for distributing bioactive molecules with high spatiotemporal accuracy. The tubular network of the Endoplasmic Reticulum (ER) constitutes a system for the delivery of luminal solutes it stores, including Ca 2+ , across the cell periphery. The physical nature and factors underlying the ER’s functioning as a fluidics system are unclear. Using an improved ER transport visualisation methodology combined with optogenetic Ca 2+ dynamics imaging, we observed that ER luminal transport is modulated by natural ER tubule narrowing and dilation, directly proportional to the amount of an ER membrane morphogen, Reticulon 4 (RTN4). Consequently, the ER morphoregulatory effect of RTN4 defines ER’s capacity for peripheral Ca 2+ delivery and thus controls axonogenesis. Excess RTN4 limited ER luminal transport, Ca 2+ release and iPSC-derived cortical neurons’ axonal extension, while RTN4 elimination reversed the effects. Summary Intracellular transport through the lumen of the ER network is modulated through narrowing/dilation of ER tubules by a membrane morphogen – RTN4, a process controlling axonogenesis by limiting the delivery of ER-stored Ca 2+ .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.017
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.240
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2021
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicPhotoreceptor and optogenetics researchFrench-language works237,207