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Palmitoylation of SARS‐CoV‐2 Spike Protein is prevented by Fatty Acid Synthase Inhibitors

2021· article· en· W3162732250 on OpenAlexafffund
Katrina Mekhail

Bibliographic record

VenueThe FASEB Journal · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
Topicinterferon and immune responses
Canadian institutionsMuscular Dystrophy CanadaUniversity of TorontoSt. Michael's Hospital
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchSt. Michael’s Hospital FoundationCalifornia HIV/AIDS Research Program
KeywordsPalmitoylationCoronavirusCytosolCell biologyBiologyHEK 293 cellsProtein domainBiochemistryChemistryEnzymeCysteineGeneCoronavirus disease 2019 (COVID-19)

Abstract

fetched live from OpenAlex

The COVID‐19 pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS‐CoV2), has resulted in a significant loss of human life due in part to the paucity of therapeutic options for treatment of the disease. The Spike glycoprotein is responsible for the attachment and infection of host cell and as such it is the target of many countermeasures including vaccines. Most of these therapeutics focus only on the ectodomain of the protein leaving the cytosolic domain of the Spike protein largely unexplored. Our study focuses on the cytosolic domain of the Spike protein as it conserved amongst coronaviruses. This domain contains numerous highly conserved cysteine (cys) residues that are potential sites of S ‐palmitoylation; a post‐translational modification mediated by the host enzymes (palmitoyltransferases) that add palmitate to the target protein. In other coronaviruses, palmitoylation of the cytosolic domain of the Spike protein is required for its partitioning into de novo synthesized viral progeny. Here we investigated the cytosolic domain of Spike and its interaction with the protein palmitoyltransferase ZDHHC5. We have found that the Spike protein is palmitoylated on multiple juxtamembrane cysteine residues. Additionally, increased abundance of ZDHHC5 resulted in hyper‐palmitoylation of Spike while silencing of ZDHHC5 reduced palmitoylation as well as the ability of the human coronavirus 229E to form viral plaques in cell monolayers. We used a fatty acid synthase inhibitor TVB‐3166 to reduce palmitoyl‐CoA levels which in turn eliminated palmitoylation of SARS‐CoV2 Spike. Treating cells with TVB‐3166 attenuates the ability of human coronavirus 229E to form plaques and promoted the survival of mice from a lethal murine coronavirus infection. Thus, inhibition of the Spike protein palmitoylation has the potential to treat SARS‐CoV‐2 and other coronavirus infections.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.259
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes2
Has abstractyes

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