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Record W3162770821 · doi:10.1111/mec.15977

Ancient horse genomes reveal the timing and extent of dispersals across the Bering Land Bridge

2021· article· en· W3162770821 on OpenAlexafffund
Alisa O. Vershinina, Peter D. Heintzman, Duane Froese, Grant D. Zazula, Molly Cassatt‐Johnstone, Love Dalén, Clio Der Sarkissian, Shelby Dunn, Luca Ermini, Cristina Gamba, Pamela Groves, Joshua D. Kapp, Daniel H. Mann, Andaine Seguin‐Orlando, John Southon, Mathias Stiller, Matthew J. Wooller, Gennady Baryshnikov, Д. О. Гимранов, Eric Scott, Elizabeth Hall, Susan Hewitson, Irina Kirillova, П. А. Косинцев, Fedor Shidlovsky, Haowen Tong, Mikhail P. Tiunov, Sergey Vartanyan, Ludovic Orlando, Russell Corbett‐Detig, R. D. E. MacPhee, Beth Shapiro

Bibliographic record

VenueMolecular Ecology · 2021
Typearticle
Languageen
FieldEnvironmental Science
TopicWildlife Ecology and Conservation
Canadian institutionsCanadian Museum of NatureYukon Department of Tourism and CultureUniversity of Alberta
FundersU.S. Bureau of Land ManagementVetenskapsrådetScience for Life LaboratoryNatural Sciences and Engineering Research Council of CanadaKnut och Alice Wallenbergs StiftelseRussian Academy of SciencesRussian Foundation for Basic ResearchUppsala Multidisciplinary Center for Advanced Computational ScienceSvenska Forskningsrådet FormasEuropean CommissionUniversity of California, Santa CruzGordon and Betty Moore FoundationNational Science Foundation
KeywordsBiologyLand bridgeBridge (graph theory)Ancient DNAGenomeEcologyEvolutionary biologyBiological dispersalGeneticsPopulationGeneDemography

Abstract

fetched live from OpenAlex

The Bering Land Bridge (BLB) last connected Eurasia and North America during the Late Pleistocene. Although the BLB would have enabled transfers of terrestrial biota in both directions, it also acted as an ecological filter whose permeability varied considerably over time. Here we explore the possible impacts of this ecological corridor on genetic diversity within, and connectivity among, populations of a once wide-ranging group, the caballine horses (Equus spp.). Using a panel of 187 mitochondrial and eight nuclear genomes recovered from present-day and extinct caballine horses sampled across the Holarctic, we found that Eurasian horse populations initially diverged from those in North America, their ancestral continent, around 1.0-0.8 million years ago. Subsequent to this split our mitochondrial DNA analysis identified two bidirectional long-range dispersals across the BLB ~875-625 and ~200-50 thousand years ago, during the Middle and Late Pleistocene. Whole genome analysis indicated low levels of gene flow between North American and Eurasian horse populations, which probably occurred as a result of these inferred dispersals. Nonetheless, mitochondrial and nuclear diversity of caballine horse populations retained strong phylogeographical structuring. Our results suggest that barriers to gene flow, currently unidentified but possibly related to habitat distribution across Beringia or ongoing evolutionary divergence, played an important role in shaping the early genetic history of caballine horses, including the ancestors of living horses within Equus ferus.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.174

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.239
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations58
Published2021
Admission routes2
Has abstractyes

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