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Antimicrobial Activity Of A Histone Derived Peptide In The Airway Surface Liquid

2021· article· en· W3163604188 on OpenAlexaff
Matthew Biggart, Kai Hilpert, Robert Tarren, Deborah L. Baines

Bibliographic record

VenueThe FASEB Journal · 2021
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAntimicrobial Peptides and Activities
Canadian institutionsInstitute of Infection and Immunity
Fundersnot available
KeywordsThapsigarginHistoneCell biologyExtracellularViability assayBiologyInnate immune systemIntracellularCellImmunologyImmune systemBiochemistry

Abstract

fetched live from OpenAlex

Extracellular histones are viewed as cytotoxic markers in cell death, apoptosis and NETosis. However, extracellular histones have been found to carry out a number of roles outside their function as a damage associated molecular patterns to signal cell death. Extracellular histones have been seen to act as an early release marker of cell stress, influence cell growth, have antimicrobial activity and bioactive peptides. A suggested method for the intentional secretion of histones has been show through amphisomes, with histones being present in the proteome of healthy biological systems. Airway surface liquid (ASL), present in the lumen of the airways plays a critical role in airway defense and innate immunity. We identified a number of histone derived peptides by de novo peptide sequencing of the airway surface liquid. In ASL overlying H441, Calu3 and BMI‐1 transduced human bronchial epithelial cells (HBEC) we identified similar histone peptides. This was supported by their presence in sputum samples from people with and without Cystic Fibrosis disease. To test whether the ASL histone peptides had a bioactive role we produced synthetic analogues using SPOT peptide synthesis. The peptides were then tested for effects on human embryonic kidney (HEK 293) cell growth, viability and intracellular Ca 2+ [Ca2+]i. One candidate, MAT9 when screened suppressed the rise in [Ca2+]i in response to thapsigargin (p=0.001, n=8 with 16 replicates), but did not affect cell viability or cell growth. When MAT9 (10µM) was tested on H441 airway epithelial cells, it increased the thapsigargin‐induced rise in [Ca2+]i (P=0.01, n=6, with 12 replicates). This difference in calcium response could be due to a lack of toll‐like receptors (known receptors for histone proteins) in HEK cells which are present in H441 cells. Alongside this MAT9 (10µM) inhibited growth of luminescent Pseudomonas aeruginosa and was able to significantly reduce the growth rate over 4 hours at 5µM (P=0.01, n=4, with 16 replicates). Outside of this antibacterial activity, preliminary data showed some activity against Sars‐Cov2 replication in Caco‐2 cells. This data indicates that MAT9 is a histone derived peptide with bioactivity, and its proline‐alanine sequence may represent a chance to enhance this activity by changing its isomerization.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.257
Teacher spread0.241 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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