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Generation of an inducible arginase‐1 deficient mouse model

2013· article· en· W3166155066 on OpenAlexaff
Kamalika Mukherjee, Laurel L. Ballantyne, Angie Sin, Tim St. Amand, Colin Funk

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolism and Genetic Disorders
Canadian institutionsQueen's University
Fundersnot available
KeywordsArginaseHyperammonemiaEndocrinologyUrea cycleTamoxifenInternal medicineKnockout mouseOrnithineWestern blotBiologyArginineMedicineGeneticsGeneReceptorAmino acidCancer

Abstract

fetched live from OpenAlex

Arginase‐1 (Arg1) catalyzes the final step in the urea cycle to convert arginine to ornithine + urea. In the rarest of the urea cycle disorders, genetic deficiency of Arg1 results in hyperargininemia with occasional bouts of hyperammonemia, eventually leading to neurological problems and failure to thrive. Arg1 deficient mice die at two weeks of age. In order to circumvent the early mortality we generated an inducible knockout model by crossing “floxed” Arg1 deficient mice (JAX strain C57BL/6‐Arg1tm1Pmu/J) with Cre‐ER‐T2 mice (JAX strain B6.129‐Gt(ROSA)26Sortm1(cre/ERT2)Tyj/J). Arg1‐Cre mice were indistinguishable from control mice. However, when treated with 4‐OH‐tamoxifen for 2 days at birth by intragastric administration, or for 5 consecutive days with i.p. tamoxifen at 4, 8, or 12 weeks (n=4–8) all mice died within 12–14 days or reached humane endpoints. DNA analysis confirmed the deletion of exons 7 and 8 and Western blot analysis showed loss of Arg1 expression in mouse embryo fibroblasts and liver hepatocytes derived from tamoxifen‐treated Arg1‐Cre mice. Hyperammonemia was evident in the crisis period 7–12 days after tamoxifen administration prior to gait and imbalance problems that presented clinically at the end stage. These mice should be a useful model to study the mechanisms of neurological deficits resulting from Arg1 deficiency in aged mice provided that the hyperammonemia can be controlled.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.025

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0080.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.254
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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