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Oscillating wildly: Turning the evolution of respiratory rhythm generation on its head

2015· article· en· W3166766515 on OpenAlexafffund
Mufaddal I. Baghdadwala, William M. Trask, Richard J. A. Wilson

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldNeuroscience
TopicNeuroscience of respiration and sleep
Canadian institutionsUniversity of Calgary
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsRhombomereBiologyHindbrainAnatomyNeuroscienceBreathingExtant taxonAmphibianRespiratory systemRhythmEvolutionary biologyCentral nervous systemInternal medicineMedicineEcologyGenetics

Abstract

fetched live from OpenAlex

How the neuronal control of air breathing evolved is unknown. Brainstem circuits controlling breathing have only been investigated in a small handful of extant vertebrates. This makes an evolutionary analysis challenging. In the frog, we have found evidence for three areas involved in respiratory rhythm generation, each with distinct pharmacologies: the buccal area in rhombomere 7 as well as both lung burst priming and lung burst power stroke regions situated in rhombomeres 4‐5. We have long assumed that circuits generating air breathing in mammals and frogs are homologous, evolving from a common ancestry. However, there are some inconsistencies with this assumption. The primary inspiratory oscillator in mammals, the PreBötzinger Complex (PreBötC), is located in rhombomere 7‐‐the same rhombomere as the frog buccal area‐‐and the rhythms produced by buccal and PreBötC are stubbornly independent of CO2. In comparison, like pre‐inspiratory/expiratory activity in mammals, the lung bursts in the frog are highly CO2 sensitive, and both originate in rhombomere 4‐5. These data suggest that we may have to turn our previous hypothesis that the frog lung area and PreBötC are homologous on its head and consider the possibility that the mammalian PreBötC evolved from a fish oscillator used for water‐breathing. Until more studies on non‐mammalian vertebrates are performed any hypothesis on the evolution of air breathing is but a work in progress, and with so little data currently available, further oscillations are likely. This work was funded by NSERC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0010.004
Scholarly communication0.0010.002
Open science0.0010.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.145
GPT teacher head0.321
Teacher spread0.176 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes2
Has abstractyes

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