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Hybrid lactoferrins containing transferrin C1 or C2 subdomains bind asialoglycoprotein receptors

2010· article· en· W3167407651 on OpenAlexaff
Douglas D. McAbee, Sid Seth, Chun‐Ling Jung, Henry Wong, Anthony B. Schryvers

Bibliographic record

VenueThe FASEB Journal · 2010
Typearticle
Languageen
FieldNursing
TopicInfant Nutrition and Health
Canadian institutionsUniversity of Calgary
FundersNational Institutes of HealthResearch Corporation for Science Advancement
KeywordsAsialoglycoprotein receptorRecombinant DNADissociation constantChemistryTransferrinBiochemistrySf9Surface plasmon resonanceBinding siteReceptorStereochemistryMolecular biologyBiologySpodopteraGeneNanotechnology

Abstract

fetched live from OpenAlex

The Fe‐binding proteins lactoferrin (Lf) and transferrin (Tf) are structurally similar, each Fe‐binding lobe (N, C) composed of two sub‐domains (N1/N2; C1/C2). Lf, but not Tf, binds the major subunit of the asialoglycoprotein receptor (RHL1) in a galactose‐independent manner. To identify C‐lobe regions involved in RHL1 binding, we generated recombinant Lf‐Tf hybrid proteins in which Tf C1 or C2 subdomains were positioned within a Lf background. cDNAs of human Lf and Tf encoding Lf:Tf C1 and Lf:Tf C2 were constructed and expressed in Sf9 insect cells. Binding constants of purified native and recombinant Lfs for RHL1 were determined by surface plasmon resonance. Binding of desialylated ligands and native and recombinant Lf proteins to immobilized RHL1 required Ca 2+ and neutral pH. Tf did not bind RHL1 under any conditions. Average dissociation constants measured for the various proteins were as follows: native Lf: 138 ± 44 nM; r‐Lf: 87 ± 50 nM; Lf:Tf C1 : 31 ± 28 nM; Lf:TfC2: 150 ± 76 nM; and asialofetuin: 21 ± 16 nM. Binding constants for native and recombinant Lfs did not differ statistically. Thus, Tf C1 or C2 sub‐domains in a Lf background showed no loss of RHL1‐binding activity. We conclude that the RHL1 binding determinants on Lf do not reside solely in one of the C‐lobe subdomains. (Support: Research Corporation , NIH DK‐61984).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.290
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2010
Admission routes1
Has abstractyes

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