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Functional analysis of splice variants of human constitutive androstane receptor: Investigation with flavonol (3‐hydroxyflavone) and its metabolites

2013· article· en· W3167765624 on OpenAlexafffund
Aik Jiang Lau, Thomas K. H. Chang

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEstrogen and related hormone effects
Canadian institutionsUniversity of British Columbia
FundersCanadian Institutes of Health ResearchMichael Smith Health Research BC
KeywordsGalanginIsorhamnetinMyricetinChemistryPharmacologyTaxifolinQuercetinKaempferolTransactivationConstitutive androstane receptorBiochemistryBiologyTranscription factorGeneNuclear receptorAntioxidant

Abstract

fetched live from OpenAlex

Constitutive androstane receptor (CAR) controls the transcription of genes involved in diverse biological functions, including bioactivation and detoxification of drugs and toxicants. Naturally occurring splice variants of human CAR (hCAR) exist, including hCAR‐SV23 (insertion of amino acids SPTV), hCAR‐SV24 (APYLT), and hCAR‐SV25 (SPTV and APYLT). In the present study, we investigated the effect of flavonol (3‐hydroxyflavone) and its metabolites (galangin, datiscetin, kaempferol, morin, quercetin, isorhamnetin, tamarixetin, myricetin, and syringetin) on the functionality of hCAR‐SV23, hCAR‐SV24, and hCAR‐SV25. As assessed in a cell‐based reporter gene assay, only flavonol activated hCAR‐SV23 and hCAR‐SV24, whereas none of them activated hCAR‐SV25. Flavonol did not recruit steroid receptor coactivators SRC‐1, SRC‐2, or SRC‐3 to the ligand‐binding domain of hCAR‐SV23 or hCAR‐SV24. By comparison, flavonol, galangin, datiscetin, kaempferol, quercetin, isorhamnetin, and tamarixetin activated hCAR‐WT, but only flavonol recruited coactivators. Thus, addition of OH or OCH 3 substituent at the C2′ or C5′ position of flavonol abolished activation of hCAR‐WT. In summary, flavonol and its metabolites differentially activated hCAR isoforms and, in some cases, this occurred by a mechanism that did not involve coactivator recruitment. [Supported by CIHR and MSFHR]

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.215
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes2
Has abstractyes

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