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Proteomic Analysis Suggests Altered Mitochondrial Metabolic Profile in Diabetic Cardiomyopathy

2021· article· en· W3170176000 on OpenAlexafffund
Karina Pereira Gomes, Luiz G. Almeida, Noura Ballasy, Pariya Edalat, Daniel Young, Antoine Dufour, Vaibhav B. Patel

Bibliographic record

VenueThe FASEB Journal · 2021
Typearticle
Languageen
FieldMedicine
TopicAdipose Tissue and Metabolism
Canadian institutionsUniversity of Calgary
FundersCanadian Institutes of Health Research
KeywordsDiabetic cardiomyopathyInternal medicineEndocrinologyHeart failureDownregulation and upregulationCardiomyopathyVentricleProteomicsMedicineDiabetes mellitusProtein subunitBiologyGeneBiochemistry

Abstract

fetched live from OpenAlex

Diabetic cardiomyopathy (DCM) occurs independently of coronary artery disease or hypertension, often leading to heart failure and death. Although remarkable progress has been made in recent years, there is still no specific therapy for myocardial damage induced by DCM, mainly due to its unclear molecular basis. To elucidate the molecular mechanisms involved in the DCM progress, we have performed advanced proteomic profiling analysis of heart tissue samples from the membrane‐bound leptin receptor deficient ( db/db ) mice, a widely used murine model of type 2 diabetes. As previously shown by our research group, db/db mice exhibit clinically relevant DCM phenotype by 6 months of age that includes diastolic dysfunction, cardiac hypertrophy, and cardiac fibrosis. Six‐month‐old C57BL/6J‐lepr/lepr ( db/db ) and C57BL/6J (wild type [WT]) male mice were euthanized, and the left ventricle (LV) was appropriately collected and processed for proteomic analysis. By shotgun proteomics performed after dimethyl labelling, we identified 77 differentially expressed proteins in LV of db/db mice. Among these, 27 proteins were downregulated in response to chronic diabetes, while 50 were upregulated. Many of these proteins were associated with energy metabolism, cytoskeleton organization, and calcium handling. The peptide levels of subunits alpha, beta and delta of ATP synthase were upregulated in the LVs of db/db mice. These subunits are arranged to form the F1 domain, a catalytic assembly of the enzyme. We also found a marked induction of cytochrome c1 in db/db mice, which is a catalytic core subunit of the complex III, responsible for electron transfer to cytochrome c. We propose that this may represent an adaptive mechanism by which the diabetic heart attempts to increase electron transfer and thereby enhance mitochondrial ATP production. Conversely, in db/db mice we found a decrease in peptide levels of NADH dehydrogenase 1 beta subcomplex subunit 11, a subunit of complex I that catalyzes transfer of electrons to ubiquinone. In diabetic hearts, we also found a downregulation of atypical kinase COQ8A, an essential lipid‐soluble electron transporter involved in the biosynthesis of ubiquinone. These data suggest that despite attempts by hearts from the diabetic mice to augment mitochondrial ATP production, decreased levels of key components of the electron transport chain may contribute to impaired mitochondrial ATP production. It is likely that ATP synthase subunits and cytochrome c1 may also be downregulated with prolonged persistence of the diabetic phenotype. Our study suggests that diabetic hearts displayed altered expression of mitochondrial metabolic peptides, which may contribute to the progression of DCM in db/db mice.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.267
Teacher spread0.252 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2021
Admission routes2
Has abstractyes

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