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Liver microRNAs are differentially expressed in human simple steatosis and non alcoholic steatohepatitis with potential repercussions on lipid metabolism and inflammatory status

2013· article· en· W3171368361 on OpenAlexaffabout
Elena M. Comelli, Tae‐Hyung Kim, Bianca M. Arendt, Natasha Singh, Zhaolei Zhang, Johane P. Allard

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldMedicine
TopicLiver Disease Diagnosis and Treatment
Canadian institutionsToronto General HospitalUniversity Health NetworkUniversity of Toronto
Fundersnot available
KeywordsSteatohepatitisSteatosisFatty livermicroRNALipid metabolismFibrosisBiologyInternal medicineEndocrinologyCancer researchMedicineDiseaseGeneBiochemistry

Abstract

fetched live from OpenAlex

Non‐alcoholic fatty liver disease is associated with fat deposition in liver. It can present as simple hepatic steatosis (SS) or as non alcoholic steatohepatitis (NASH), which is characterized by inflammation leading to fibrosis. It is unclear which molecular mechanisms differentiate SS and NASH. Progression of SS to NASH is associated with altered hepatic microRNA (miRNA) expression in animal models, but human data are scarce. We analyzed the miRNA expression signature in histology‐proven healthy (H; n= 24), SS (n= 24) or NASH (n= 23) human adult livers by NanoString technology. We found that samples from the 3 groups cluster by disease state based on 142 differentially expressed miRNAs, suggesting that a specific liver miRNA signature distinguishes H, SS and NASH. Putative gene targets of these miRNAs were identified with 12 algorithms and used for gene ontology enrichment analysis. This showed that processes including gene transcription, apoptosis and the TGF‐β signaling pathway are commonly altered between H, SS and NASH. In addition, NASH was associated with altered regulation of lipid storage, IL‐6 and adipocytokine signaling pathways as compared to H and SS and regulation of cholesterol storage as compared to SS. These differences may have therapeutic potential. Funding sources: American College of Gastroenterology, Canadian Institutes of Health Research

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.227
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes2
Has abstractyes

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