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Record W3172071691 · doi:10.1089/regen.2021.0003

CRISPR-Cas9—The Potential “Holy Grail” for Generating Biomedically Relevant Cells through Cell Fate Engineering

2021· article· en· W3172071691 on OpenAlexaff
Vignesh Krishnamoorthy, Jody J. Haigh

Bibliographic record

VenueRe GEN Open · 2021
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCRISPR and Genetic Engineering
Canadian institutionsCancerCare ManitobaUniversity of ManitobaResearch Institute in Oncology and Hematology
Fundersnot available
KeywordsCRISPRGenome editingCas9Cell fate determinationBiologyComputational biologyTransdifferentiationProgenitor cellRegenerative medicineStem cellCell biologyGeneGeneticsTranscription factor

Abstract

fetched live from OpenAlex

Background: The main goal of cellular therapy is to effectively engineer the fate of stem/progenitor/terminally differentiated cells into desired lineages to promote therapeutic tissue regenerative effects. Numerous methods such as ectopic transgene overexpression, small molecules, micro RNAs, and CRISPR-Cas9 have been used to engineer cell fate. Objective: In this review, we have attempted to highlight various cell fate engineering strategies with a particular emphasis on transdifferentiation that involves CRISPR-Cas9-based approaches in what appear to be the most promising and medically relevant preclinical models. Methods: A large number of recent publications involving the application of CRISPR-Cas9-based gene regulation strategies in modulating the identities of different cell types for promoting efficacious tissue regeneration were reviewed. Results: From the literature, it appears that the ability to manipulate endogenous gene expression programs has dramatically increased with the help of CRISPR-Cas9-based gene activation/repression/knockout strategies. These approaches have also enabled the generation of cells that closely resemble their true cellular counterparts. Also, in most cases, the efficacy of cell fate engineering through the CRISPR-Cas9-based technology is quite comparable to other methods of cell fate manipulation and in some instances superior. Conclusion: The reviewed studies demonstrate novel ways in manipulating cellular identities for regenerative medicine applications using the CRISPR-Cas9-based genome editing tool. Transdifferentiating certain cell types into another using CRISPR-Cas9 seems to have enjoyed more success in comparison to conventional methods. These findings highlight the favorable attributes of the CRISPR-Cas9-based technology in cell-based therapies and their potential use in the near future.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.297
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2021
Admission routes1
Has abstractyes

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