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Record W3173556047 · doi:10.21105/joss.03262

DataLad: distributed system for joint management of code, data, and their relationship

2021· article· en· W3173556047 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueThe Journal of Open Source Software · 2021
Typearticle
Languageen
FieldDecision Sciences
TopicScientific Computing and Data Management
Canadian institutionsMontreal Neurological Institute and HospitalMcGill University
FundersNational Institute of Biomedical Imaging and BioengineeringNational Institute of Mental HealthBundesministerium für Bildung und ForschungNational Science Foundation
KeywordsComputer sciencePython (programming language)InteroperabilityData managementPersistent data structureSoftware engineeringData sharingDistributed computingDatabaseWorld Wide WebOperating system

Abstract

fetched live from OpenAlex

DataLad is a Python-based tool for the joint management of code, data, and their relationship, built on top of a versatile system for data logistics (git-annex) and the most popular distributed version control system (Git). It adapts principles of open-source software development and distribution to address the technical challenges of data management, data sharing, and digital provenance collection across the life cycle of digital objects. DataLad aims to make data management as easy as managing code. It streamlines procedures to consume, publish, and update data, for data of any size or type, and to link them as precisely versioned, lightweight dependencies. DataLad helps to make science more reproducible and FAIR (Wilkinson et al., 2016). It can capture complete and actionable process provenance of data transformations to enable automatic re-computation. The DataLad project (datalad.org) delivers a completely open, pioneering platform for flexible decentralized research data management (RDM) (Hanke, Pestilli, et al., 2021). It features a Python and a command-line interface, an extensible architecture, and does not depend on any centralized services but facilitates interoperability with a plurality of existing tools and services. In order to maximize its utility and target audience, DataLad is available for all major operating systems, and can be integrated into established workflows and environments with minimal friction.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.016
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.913
Threshold uncertainty score0.695

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0160.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0040.005
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.266
GPT teacher head0.397
Teacher spread0.130 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it