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Edwardsiella tarda Alter Their Protein Expression Profiles at Permissive Human Temperatures and Control the Host Cytoskeleton for their Benefit

2012· article· en· W3173604864 on OpenAlexaffabout
Byron Joel Tenkink, Rebecca J. Noort, Bupe A. Siame, Julian A. Guttman, Ka Yin Leung

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldEnvironmental Science
TopicParasite Biology and Host Interactions
Canadian institutionsTrinity Western UniversityWestern UniversitySimon Fraser University
Fundersnot available
KeywordsEdwardsiella tardaEffectorSecretionBiologyPathogenesisPathogenCytoskeletonCell biologyMicrobiologyImmunologyCellGeneGeneticsBiochemistry

Abstract

fetched live from OpenAlex

Edwardsiella tarda is an emerging enteric pathogen that infects both warm‐water fish and humans. While it is known that E. tarda utilizes syringe‐like type III and type VI secretion systems to deliver effector proteins into fish host cells during infection, little is known about E. tarda pathogenesis in humans at the sub‐cellular level. To investigate the pathogenic strategies employed by E. tarda we tested two hypotheses; (1) E. tarda alter the expression of secreted proteins at 37°C and (2) E. tarda hijack the host cytoskeletal system in human cells as part of their pathogenesis. To test these hypotheses we grew E. tarda at 30°C and at 37°C and compared type III and type VI secretion system protein expression profiles at the two temperatures. Some strains of E. tarda produced more secreted proteins at 37°C than at 30°C, which suggests greater activity from the pathogen's secretion systems at human body temperature. When E. tarda infections in HeLa cells were examined microscopically, we found cytoskeletal and organellar alterations in infected cells as compared to uninfected controls, demonstrating effector‐driven sub‐cellular alterations. Taken together our results indicate that E. tarda hone their protein expression machinery to their environment and control crucial aspects of their host cells during their infectious processes. Grant Funding Source : Natural Science and Engineering Research Council of Canada

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.283
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes2
Has abstractyes

Explore more

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