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Striatal development involves a switch in gene expression networks, followed by a myelination event: implications for neuropsychiatric disease

2013· article· en· W3174345971 on OpenAlexaff
Gabriela Novak, Theresa Fan, Brian F. O’Dowd, Susan R. George

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldMedicine
TopicBirth, Development, and Health
Canadian institutionsUniversity of TorontoCentre for Addiction and Mental Health
Fundersnot available
KeywordsBiologyGeneNeuroscienceDiseaseGene expressionPeriod (music)StriatumGeneticsMedicineDopaminePathology

Abstract

fetched live from OpenAlex

Abnormal development of striatal neurons is thought to be part of the pathology underlying psychiatric illness. We studied striatal gene expression patterns during an active striatal maturation period, the first two postnatal weeks in the rat. This parallels human striatal development during the second trimester, when prenatal stress is thought to lead to increased risk for neuropsychiatric disorders. Using subtractive hybridization and quantitative real‐time PCR, we characterize the developmental expression of more than 60 genes, many not previously known to play a role in neuromaturation. We show that during the first two postnatal weeks in the rat, an early gene expression network that lacks key striatal‐specific signaling pathways is downregulated and replaced by a mature gene expression network, containing key striatal‐specific genes, which confer functional identity to these neurons. Hence, early postnatal striatal neurons lack many of their key characteristics. This maturation process is followed by a rise in the expression of myelination genes, indicating a striatal‐specific myelination event. This strictly controlled developmental program is likely to be susceptible to disruption by external factors. Alterations in its normal progression may play a role in the etiology of neuropsychiatric disease. Indeed, this period is known to be a susceptibility period in both humans and rats.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.286
Teacher spread0.264 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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