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Experimental and computational structural studies of 5-substituted-3-(1-arylmethyl-1,2,3,6-tetrahydropyridin-4-yl)-1H-indoles

2021· article· en· W3174359129 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueJournal of Molecular Structure · 2021
Typearticle
Languageen
FieldChemistry
TopicSynthesis and Reactivity of Heterocycles
Canadian institutionsnot available
FundersInstitut de Cardiologie de MontréalChina Scholarship CouncilNarodowe Centrum Nauki
KeywordsChemistryMoietyDihedral angleHydrogen bondCrystal structureMoleculeIndole testCrystallographyStereochemistryIntermolecular forceSupramolecular chemistryOrganic chemistry

Abstract

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Four compounds ( 1–4 ) reported in our previous work as potential antipsychotics with affinity for dopamine D 2 and serotonin 5-HT 1A and 5-HT 2A receptors, were now subjected to detailed structural characterization. The X-ray analysis conducted for studied compounds proved that interatomic distances and bond angles in their crystal structures lie within normal values. The indole group in all compounds is planar, whereas tetrahydropyridine moiety exhibits almost ideal or close to half-chair conformation and is slightly or significantly rotated in relation to the indole group plane by 9.49(1)°, 30.24(11)°, 7.43(6)° and 15.98(18)° in compounds 1–4, respectively. The R 1 substituents of tetrahydropyridine group in all cases form a dihedral angle with the indole moiety with value ranging from 66.57(14)° ( 2 ) to 86.73(17)° ( 4 ). The crystal structure of 1 is stabilized by N–H···N hydrogen bonds and C–H···π interactions. The intermolecular C(12)−H(12B)··· Cg (2) interactions form a supramolecular two-dimensional network. The molecules in the crystal of 2 are linked by N–H···N. The formed chains are additionally stabilized with C–H···S hydrogen bonds. In case of compound 3 , molecule chains are formed by N–H···N hydrogen bonds and are further linked via C–H···O hydrogen bonds into layer. The crystal structure is also stabilized by intermolecular C–H···π interactions. The molecules of compound 4 are linked by N–H···N hydrogen bonds and further stabilized by intermolecular C–H···π interactions. Crystallographic analysis was complemented with computational studies, such as Frontier Molecular Orbital analysis, which indicated that all four compounds display similar chemical reactivity, regardless of different R 1 and R 2 substituents. In addition, the most reactive parts of the compounds appear to be the indole and double bond located in tetrahydropyridine moiety. Lastly, the calculations of electrostatic potential and non-covalent interactions have been performed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score0.712

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.284
Teacher spread0.270 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it