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Regulation of PI4KIIα distribution between the Golgi and endosomal compartments

2012· article· en· W3174464030 on OpenAlexaff
Marko Jović, Naveen Bojjireddy, Michelle J. Kean, Anne‐Claude Gingras, Julie A. Brill, Tamás Balla

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCellular transport and secretion
Canadian institutionsHospital for Sick ChildrenLunenfeld-Tanenbaum Research Institute
Fundersnot available
KeywordsEndosomeGolgi apparatusCell biologySubcellular localizationNeurodegenerationChemistryBiologyIntracellularEndoplasmic reticulumCytoplasm

Abstract

fetched live from OpenAlex

Phosphatidylinositol 4‐kinases (PI4Ks) are essential for trafficking along the secretory and degradative routes. The importance of PI4K localization is underscored by the role of PI4KIIα, an enzyme localized to trans‐Golgi and endosomes, in EGF receptor degradation and Wnt signaling, and its suspected role in the late‐onset neurodegeneration. Although membrane association of PI4KIIα through a palmitoyl moiety is suggestive of its cycling between endosomes and Golgi, little is known about the regulation of PI4KIIα subcellular localization. Here we performed a proteomic screen of potential binding partners of PI4KIIα and identified a vesicular fusion protein VAMP‐3, that was confirmed by co‐immunoprecipitation. Expression of Tetanus toxin (TeNT), which specifically cleaves VAMP‐3, resulted in accumulation of PI4KIIα on endosomes. Conversely, overexpression of TeNT with the TeNT‐resistant VAMP‐3 mutant recovered the Golgi localization of PI4KIIα. We also found that PI4KIIα rapidly trafficked back to the Golgi within 2–3 min following photobleaching of the Golgi subpopulation, whereas the rate of its reappearance was significantly decreased in the presence of TeNT. Collectively, these data suggest that VAMP‐3 regulates PI4KIIα retrograde transport, uncovering new aspects of the role of PI4KIIα in human health and disease. Supported by the NICHD Intramural research program

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.232
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2012
Admission routes1
Has abstractyes

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Same venueThe FASEB JournalSame topicCellular transport and secretionFrench-language works237,207