MétaCan
Menu
← Back to cohort

Analysis of Lymphocyte Specific Protein‐1 (LSP‐1) expression in normal primary rat hepatocytes and liver following partial hepatectomy

2012· article· en· W3174517000 on OpenAlexaff
Kelly Koral, Shirish Paranjpe, Wendy M. Mars, Jan Jongstra, George K. Michalopoulos

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA Research and Splicing
Canadian institutionsUniversity Health Network
Fundersnot available
KeywordsHepatocyteBiologyHCCSHepatocellular carcinomaMessenger RNALymphocyteGene expressionMolecular biologyGene isoformIn vitroCancer researchGeneImmunology

Abstract

fetched live from OpenAlex

Hepatocellular carcinoma (HCC), the most frequently diagnosed form of liver cancer, is associated with high mortality rates. A recent finding of our laboratory shows that a portion of the gene for lymphocyte‐specific protein 1 (LSP1), an intracellular F‐actin binding protein expressed in neutrophils, macrophages and endothelial cells, is deleted or amplified in a majority of HCCs evaluated. The deletions of LSP‐1 correlated with large tumor size indicating that LSP‐1 may play an inhibitory role in hepatocyte growth. Based on these findings, we hypothesize that LSP‐1 expression is a critical regulator of cellular growth underlying HCC development. However, the expression of LSP‐1 in hepatocytes and normal liver remains to be elucidated. Utilizing immunoblotting and Reverse Transcriptase PCR (RT‐PCR), we examined the total protein and mRNA expression of LSP‐1 in primary rat hepatocytes in vitro and in rat liver tissue after partial hepatectomy. In the rat, LSP‐1 has three known splicing variants; therefore we will examine the expression of the isoforms of LSP‐1 using RT‐PCR with isoform specific LSP‐1 primers. Results from both immunoblotting and RT‐PCR experiments indicate that primary rat hepatocytes and tissue from partial hepatectomized livers express LSP‐1 and that the expression correlates inversely with the rate of growth. Future studies aim to address the function of LSP‐1 in normal and diseased liver states and whether LSP‐1 plays a critical role in hepatocyte growth. Research supported by grant 5T32HL094295‐02.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.246
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

Explore more

Same venueThe FASEB Journal→Same topicRNA Research and Splicing→French-language works237,207→