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Aberrant glycerophosphocholine metabolism is a primary and targetable pathology in Alzheimer Disease

2013· article· en· W3174726081 on OpenAlexaff
Hongbin Xu, Leigh Anne Swayne, Katy Morin, Stephen Fai, Daniel Figeys, Steffany A. L. Bennett

Bibliographic record

VenueThe FASEB Journal · 2013
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsCarleton UniversityUniversity of VictoriaUniversity of Ottawa
Fundersnot available
KeywordsPhospholipase A2Second messenger systemEntorhinal cortexCytosolPhospholipase DArachidonic acidChemistryBiochemistryCell biologyMass spectrometry imagingBiologyIntracellularPhospholipidHippocampusEnzymeNeuroscienceMembraneMass spectrometry

Abstract

fetched live from OpenAlex

Glycerophospholipids are often overlooked as immediate response elements yet they exert fundamental control over cell viability. They represent the major building blocks of biological membranes and modulate membrane trafficking. Enzymatic processing of choline‐containing membrane phospholipids by cytosolic phospholipase A2 (cPLA2) generates powerful smaller intracellular second messengers (~450–600 Da) as well as arachidonic acid and its metabolites. Individual isoforms control distinct cellular processes, but little is known about how they respond to normal brain functions and neurodegenerative disease state. Recent advances in mass spectrometry are enabling large‐scale profiling of individual lipid isoforms in brain tissue and cells. We capitalize on these advances to address the question whether aberrant membrane lipid metabolism is a risk factor for neurodegenerative disease. Here, we employed high performance liquid chromatography combined with electrospray ionization mass spectrometry (LC‐ESI‐MS) to profile glycerophosphocholine second messenger metabolism in the post‐mortem human entorhinal cortex and hippocampus, as well as in the temporal cortex and hippocampus of C57BL/6 × 129SV/J hybrid mice over the course of a 24 h period.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.224
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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