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Role of protein kinase D (PKD) phosphorylation of Oxysterol binding protein (OSBP) in sphingomyelin biosynthesis

2011· article· en· W3175072439 on OpenAlexafffundabout
Asako Goto, Neale D. Ridgway

Bibliographic record

VenueThe FASEB Journal · 2011
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCellular transport and secretion
Canadian institutionsDalhousie University
FundersCanadian Institutes of Health Research
KeywordsPleckstrin homology domainCell biologyGolgi apparatusBiologyPhosphorylationEndoplasmic reticulum

Abstract

fetched live from OpenAlex

Oxysterol binding protein (OSBP) is a high affinity receptor for oxysterols that interacts with the endoplasmic reticulum (ER) and trans‐Golgi network via FFAT and pleckstrin homology (PH) domains, respectively. In vitro, OSBP displays cholesterol extraction and transfer activity and regulates the cholesterol content of Golgi and post‐Golgi membranes. Through this activity, OSBP controls CERT‐mediated ER‐to‐Golgi ceramide transfer, which is the rate‐determining step in sphingomyelin (SM) biosynthesis. CERT and OSBP are phosphorylated by protein kinase D (PKD), thus we investigated whether CERT activity and SM synthesis is regulated by OSBP phosphorylation at serine 242 by PKD. OSBP and PKD are physically associated, however OSBP is not required for Golgi association and activation of PKD. While transfection of wild‐type OSBP restored sterol activation of SM biosynthesis in OSBP‐depleted CHO cells, OSBP S242A and S242D were ineffective. Another OSBP‐related protein ORP9, which transfers cholesterol from ER to Golgi but is not involved in SM biosynthesis, is not a substrate for or associated with PKD. We conclude that an OSBP phosphorylation/dephosphorylation cycle mediated by PKD is necessary and specific for OSBP function in the context of regulating SM biosynthesis. Supported by the Canadian Institutes of Health Research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.200
Teacher spread0.187 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2011
Admission routes3
Has abstractyes

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