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ALTERNATIVELY SPLICED BNIP3 ISOFORM PROMOTES CELL SURVIVAL BY RECRUITING BCL‐2 TO THE IP3‐RECEPTOR

2012· article· en· W3175469080 on OpenAlexaff
Joseph W. Gordon, Hai Yan, Hongying Gang, Lorrie A. Kirshenbaum

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCRISPR and Genetic Engineering
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsEndoplasmic reticulumCell biologyProgrammed cell deathMutantGene isoformBiologyAlternative splicingUnfolded protein responseReceptorCellApoptosisBiochemistryGene

Abstract

fetched live from OpenAlex

Alternative splicing provides a versatile mechanism by which cells generate proteins with different or even antagonistic properties. We previously identified a novel splice variant of Bnip3 (Bnip3ΔEx3) generated in cardiac myocytes subjected to hypoxia. Like Full‐length Bnip3 (Bnip3FL), Bnip3ΔEx3 forms a complex with the antiapoptotic protein Bcl‐2; whereas, functional analysis of a Bnip3 mutant that lacks a Bcl‐2 interacting domain acts as a more potent inducer of programmed cell death, that can not be inhibited by Bnip3ΔEx3. In silico analysis of Bnip3ΔEx3 reveals an endoplasmic reticulum (ER) targeting domain within its C‐terminus, that is not present in Bnip3FL. We validated that Bnip3ΔEx3 is indeed localized to the ER and demonstrate that Bnip3ΔEx3 mutants that lack this ER targeting domain fail to antagonize cell death induced by Bnip3FL or hypoxia. Furthermore, we demonstrate that Bnip3ΔEx3 physically interacts with the IP3 receptor and serves to recruit Bcl‐2 to the ER; whereas, Bnip3ΔEx3 fails to protect against programmed cell death in the presence of a Bcl‐2 mutant that lacks its IP3 receptor interacting domain. Given the otherwise lethal consequences of de‐regulated Bnip3FL expression in post‐mitotic cells, our findings reveal a novel intrinsic defense mechanism that opposes the lethal consequences mitochondrial‐ER cross‐talk associated with programmed cell death in ventricular myocytes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.289
Teacher spread0.274 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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